| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0556 |
|---|
| Symbol | |
|---|
| ID | 3970759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 602615 |
|---|
| End bp | 603976 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637923672 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_530450 |
|---|
| Protein GI | 90422080 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.559091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGC GTCTTTCCGG CCTGTTCGAC AGTTTTCACC ACGACCGACG CGGTAATATC
GCAATTCTGT TCGCGTTCTC GCTGATCCCG CTGCTGGTGG CGATCGGCTG CGCCATCGAT
TACGCCCGCG CCACCCAGAT CCGCAGCAAG ATGCAATCCG CCGCCGATGC CGCCAGCGTC
GGCTCTGTCT CGAAAGCCTC ACCGGCCTTT CTTGCCGCCG GATCGATGAC CACGGATGGG
CCGATTGCGG TTGGGAGTAC CGATGCGACA AACATCTTCA ACGGCAACAT GGCCAGCCAG
TCCGGTTACA CGCTGAGCAA GCTCGATGCC GCCGTCACCA AATCCGGCGC CACCTTGACC
TCGACGGTCA CGTTCTCCGC CTCGGTCGCG ACGACGTTTC TGACGATCAT CGGCAAGACC
GCGTTGGCCA TCGGCGGCAC CTCGGTCTCG ACCTCGAGCA TGCCGGTTTA CATCGACTTC
TATCTGTTGC TCGACAACTC GCCGTCGATG GGCGTCGGCG CTACGCCGAC CGATGTTGCC
ACGATGGTCG ACAACACCTC CGACAAATGC GCCTTCGCTT GCCACGACGT CAATGACGAG
CACAACTATT ACGAACTCGC CAAGACTCTC GGCGTCAAAA CCCGGATCGA CGTGCTACGC
GACGCCACGC AACAATTGAT GGACACGGCG GCAGCCACCG CCACCTATCC GAACCAGTTC
CGCATGGCGA TCTACGATTT CGGCGCGTCG GCGCAGTCCG CGGCTCTGCG CCGCCTGTTC
GCGCTGTCAT CGAGCCTGAG CAGCGCCAAG ACCGCGGCCG GCGCCATCGA CCTGATGACG
GTCAAGGGCC AGAACGACAA CGACGATCGC GACACCAGCT ATTCGAAACT GCTGCCGGCG
ATCGACAAGC AGATCACCGC GGCAGGAGCC GGCACCTCGG ATGCGCCGCA GAAATACCTG
CTGTTCGTGT CCGACGGCGT GGCCGACGAA ACCAACGCCG GATGCGCCAA GACGATGAAG
AATGCGTTTT GGGGAAACAA GTCTCCGCGC TGCCAGTCGC CGATCGATCC GGCGTTATGC
AAGGCGATGA CCGACCGCGG CGTCAAGGTC GCGGTGCTCT ACACGACCTA TTTGGCGCTA
CCCTTGAAGC AGGCCAACGG CGATCCGTCC TGGTACGCTT CGTGGATCGC ACCGTTCAAC
GTCGGTCCCT ACGGCCCCTC GCCGAACAGC GAAATCGCCA ACAACATGAA GGCCTGCGCC
TCGCCGGGGT TCTACTTCGA AGTCAGCCCG ACCGACGGCA TCGCCGACGC CATGAATGCG
ATTTTCAGAA AGGCCGTGGC GGACGCGCGG ATCAGCAGCT GA
|
|---|
| Protein sequence | MAQRLSGLFD SFHHDRRGNI AILFAFSLIP LLVAIGCAID YARATQIRSK MQSAADAASV
GSVSKASPAF LAAGSMTTDG PIAVGSTDAT NIFNGNMASQ SGYTLSKLDA AVTKSGATLT
STVTFSASVA TTFLTIIGKT ALAIGGTSVS TSSMPVYIDF YLLLDNSPSM GVGATPTDVA
TMVDNTSDKC AFACHDVNDE HNYYELAKTL GVKTRIDVLR DATQQLMDTA AATATYPNQF
RMAIYDFGAS AQSAALRRLF ALSSSLSSAK TAAGAIDLMT VKGQNDNDDR DTSYSKLLPA
IDKQITAAGA GTSDAPQKYL LFVSDGVADE TNAGCAKTMK NAFWGNKSPR CQSPIDPALC
KAMTDRGVKV AVLYTTYLAL PLKQANGDPS WYASWIAPFN VGPYGPSPNS EIANNMKACA
SPGFYFEVSP TDGIADAMNA IFRKAVADAR ISS
|
|---|
| |