Gene RPC_0532 details

Gene Information

• Locus tag: RPC_0532
• ID: 3970773
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris BisB18
• Kingdom: Bacteria
• Replicon accession: NC_007925
• Strand: +
• Start bp: 575086
• End bp: 575706
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637923648
• Product: shikimate kinase
• Protein accession: YP_530426
• Protein GI: 90422056
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0703] Shikimate kinase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.398364
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCGAGA CGGTGTCCTC AGCCAGCCCG CTCACCGCCG CCGAAGCCGA GATCGTCGCG 
GCGCTGGGGC GGCGCCCGAT CGTGCTGGTC GGGATGATGG GCGCCGGCAA GTCCACGGTC 
GGACGCCGGC TGGCGACGCG GCTGCATCTG CCGTTCGTCG ACGCCGACAC CGAGATCGAG 
GCGGCGGCCG GGATGACCAT CGCCGAGATC TTTGCCAACC ACGGCGAGCC GTATTTCCGC 
GACGGCGAGG CGCGGGTGAT CGCGCGGCTG TTGGATAACG GCCCGCACGT GCTGGCGACC 
GGCGGCGGCG CCTTCATGCG CGACGACACC AGGCTGCGGA TCGCCGCCCA GGCGGTGTCG 
CTGTGGCTGC ACGCCGAGGC CGACGTCATC CTGCGCCGGA TCAAGCGCCG CGCCGACCGG 
CCGCTGTTGA AGACCGCCGA TCCCGCCGCC ACCATCGACC GGCTGATCGC CGAGCGCTAT 
CCGGTCTATC AAAGCGCCGA TCTCACCATT GCCTCGCGCG ACGTGCCGCA CGAAAAGATC 
GTCGACGAAT GCGTCGAGGC GCTGCACGCC CACCTTTGCC GCGGCGACCT CGCCGCTCCA 
ACCATGAGTC CCTCATCATG A 

 

Protein sequence

MSETVSSASP LTAAEAEIVA ALGRRPIVLV GMMGAGKSTV GRRLATRLHL PFVDADTEIE 
AAAGMTIAEI FANHGEPYFR DGEARVIARL LDNGPHVLAT GGGAFMRDDT RLRIAAQAVS 
LWLHAEADVI LRRIKRRADR PLLKTADPAA TIDRLIAERY PVYQSADLTI ASRDVPHEKI 
VDECVEALHA HLCRGDLAAP TMSPSS