| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0492 |
|---|
| Symbol | |
|---|
| ID | 3970254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 532306 |
|---|
| End bp | 533907 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637923608 |
|---|
| Product | Na+/H+ antiporter |
|---|
| Protein accession | YP_530386 |
|---|
| Protein GI | 90422016 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR00831] Na+/H+ antiporter, bacterial form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0986789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGCCA AATTCGAGAT CTTCTTGACC CTGCTTGCGG TGCTGGCCGG CACCGCCTGG
CTGGCGCGAC GGATCGACGT CGCGCCGGCG ATCCTGTTGC TGTTGGCGGG CATCGTGCTG
GCCCTGGTCC CGGGGATGCC GGCGATCGCC CTGCCGCCGG AGCTGGTGCT GCTGGTGGTG
CTGCCGCCGC TGATCTATTC GGCCAGCGTC GCGATGAGCT GGCGCGAGTT CAAATTCAAC
CTGGAGCCGA TCGCGCTGTT GGCGATCGGC TGCGTGATCT TCACCGCCTG CGCGGTGGCG
ACGGCGACGC ATTTTCTGAT CGGGCTGCCG TGGAGCGTCG GCTTTCTGCT CGGCGCCATC
GTGGCGCCGC CGGATGTGGT GGCGCCCTTG GCGATCGCCC GCAAGCTCGG GCTGCCGCGC
CGCATCCTGG TGGTGCTGGA AGGCGAGGGC CTCGCCAACG ACGCCACCGC GCTGATCCTG
TACCGCTTTG CGGTGGTGGC GATCACCACC GGCGCGTTCT CGCTGCCGGT GGCATCGGGC
ACTTTCGCGG CGATCCTGGG CTGCGAGATC GCGTTCGGCA TCGCGATCGG CTGGCTCAGC
CTGCGGCTGC GCCACCATGC CCGCGATCCG CAGATCGAGA TGACGCTGTC GTTGATCACG
CCCTACGCCG CCTATTGGAT TCCCGAGCAT CTCGGCGGCT CCGGGGTGAT CGCCACGGTG
ACCTGCGGGC TCTACATCAG CTGGAACGGG CCGCTGCTGA TCTCTTCGGC GACGCGGCTG
CAGGGCATCT TCTTCTGGGA TTTGGTGATC TACCTGATCG AGGGGCTGTT GTTTCTGCTC
ACCGGCTTCC AGATGCGGGT GCTGTTGGAA AAGTCGAAGG AATTTCCGCT CGCCGACATC
CTGGTCGCCA CCGGCTTGGT CGCACTGATC GTGATCGTGG CGCGGTTCGC CTGGGTGTTT
CCCGGCACCT ATCTGCAACG GCTGTGGCGC CCGCGGCTGC GCGCCGAGCC GCTACCGAAC
TGGCGCGCGA TGTTCGTGGT GGCGTTCACC GGGGTGCGCG GCGCGGTGTC GCTGGCCGCG
GCGCTGGCGC TGCCGTTGAC GCTGCCGTCC GGCGTCGACT TTCCGTATCG CGACCTGATC
CAGCTGGTGT CGTTCGGCGT CATCCTGATC ACGCTGGTCG GGCTCGGTCT CAGCCTGCCG
ATGGTGGTGC GGCTGCTCGG GATCACCCAG GACGGCCACG CCGAACACCG CCGCGAACGC
GAGGCGGAGA TCGCCGCAAG GCGCGAGGCG CTGGACGCGG CGCTGAGCTC GCTCGACGCC
ATCACCGACG ACCGCGAACT CTCCGACGAG GTGGTGAAGC TGCTGCGCGC CCGCCACCAG
ACCCGCGCCA ATCAGTTGCC GCAGCCGCCG GACGCCGACG GCAACGATGT CACCGCCACC
GGCGCCGCAT TGGTGCGCGA ACTGATCACG GAGGAACGCA AGTTCATCCA CGCGCAGCTA
CGCGATGGCA ACATCACCGA CGAAAGCCGC CGCCGCATCG AGCGCGATCT CGATCTGGAA
GAGGCGAGCC TGGCGAACCG GGAATACAAG AAGGCGTTGT GA
|
|---|
| Protein sequence | MEAKFEIFLT LLAVLAGTAW LARRIDVAPA ILLLLAGIVL ALVPGMPAIA LPPELVLLVV
LPPLIYSASV AMSWREFKFN LEPIALLAIG CVIFTACAVA TATHFLIGLP WSVGFLLGAI
VAPPDVVAPL AIARKLGLPR RILVVLEGEG LANDATALIL YRFAVVAITT GAFSLPVASG
TFAAILGCEI AFGIAIGWLS LRLRHHARDP QIEMTLSLIT PYAAYWIPEH LGGSGVIATV
TCGLYISWNG PLLISSATRL QGIFFWDLVI YLIEGLLFLL TGFQMRVLLE KSKEFPLADI
LVATGLVALI VIVARFAWVF PGTYLQRLWR PRLRAEPLPN WRAMFVVAFT GVRGAVSLAA
ALALPLTLPS GVDFPYRDLI QLVSFGVILI TLVGLGLSLP MVVRLLGITQ DGHAEHRRER
EAEIAARREA LDAALSSLDA ITDDRELSDE VVKLLRARHQ TRANQLPQPP DADGNDVTAT
GAALVRELIT EERKFIHAQL RDGNITDESR RRIERDLDLE EASLANREYK KAL
|
|---|
| |