Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0029 |
Symbol | |
ID | 3971454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 34034 |
End bp | 34624 |
Gene Length | 591 bp |
Protein Length | 196 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637923143 |
Product | nuclease (SNase-like) |
Protein accession | YP_529927 |
Protein GI | 90421557 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1525] Micrococcal nuclease (thermonuclease) homologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.139234 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTACCCAT ATTTCAGAAC GAACCCGGCA CGCATCGCCC GCTCGCCCTG GCGCGGACGG TTTTCCGCGG CCCTGCCCTG GGTCTTCGTA TTGGGCATGG CGGCAGGGAC CATGCTGCCG GCGCGGCACT GGATCCACTG GCCGTTTCCG AGCGCGACCG ACTCGTCGTC ATCGGCGCAG CGCGACCGCG AATCTGAAGC GATCTGGCAG CGCGCCGGCA GTGCCGGTGC GCGGCATCCG GTCGATGTGA TCCGCACCAT CGACGGCGAC ACCTTCGAGG CGCGGGTGCA TCTGTGGCCC GGGCTCGACA TGACGACGCG GGTGCGGCTG CGCGGCATCG ACGCGCCGGA ATTGAAGGCG CAATGCGCGC AGGAGCTGAA GCAGGCGGAG GCCGCCGGCG AAGCGCTGCA CGCCCTGCTC GGCGAGGGCG AGGTGACGAT CTACAATATC GGGCCGGACA AGTATCAGGG TCGCGTGGTC GCCGATGCCG CCACCAAGCG CACCCCGAAC CTGTCCGCGG CCCTGTTGGC GGGCGGCTAC GCCCGAGCCT ATGAGGGCGG CCACCGCAAC GGCTGGTGCG CCGGGCGCTG A
|
Protein sequence | MYPYFRTNPA RIARSPWRGR FSAALPWVFV LGMAAGTMLP ARHWIHWPFP SATDSSSSAQ RDRESEAIWQ RAGSAGARHP VDVIRTIDGD TFEARVHLWP GLDMTTRVRL RGIDAPELKA QCAQELKQAE AAGEALHALL GEGEVTIYNI GPDKYQGRVV ADAATKRTPN LSAALLAGGY ARAYEGGHRN GWCAGR
|
| |