| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4002 |
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| Symbol | |
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| ID | 3967421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 5038294 |
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| End bp | 5039379 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637923099 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_529469 |
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| Protein GI | 90023642 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.24994 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAATG CAGCTAATAC GGTTAATAGC AAGATGGCTT ATACACAGGC GGCCTATTCG
CAGGCGCTAA GCTCTAGCGC TCAAACGCAC TACCTGTTAC CCAGCGATAA AACCATCGTC
GCGCATTGGC AGCCAGCCAT ATTGTTAAAT TTAATGTGCA ATAGTTTGGC TAATGAAGAA
GCTATTGCGC TTTCTAATAA GCTTTTAAAG GGCACGCGCC TTTTTTATAG TGATTTTAGT
AAAACAAACC TGTTTATTAG CCCGGAGCAG TTTCAACGTT TTATTGTAAA TTGCAATGCT
ACCCCCAACC AATCCGATTT GGCATTTAGG TTTGGCCAAC GTTTATTGCC CGGTCATTAC
GGTGATTTTT CCCACGGCTT AAACCAAGTA AACAGCGTAT TCGCTGCCGC AGAATTAATT
CAAAAGTGCG CACATGTTTT CTCCCCATTG CTTACACCTA AGGTTAATGT GTATGCAACA
GAATTAACAA TTAGCTTTTA TTCAAGCTAT GGCTGCGGCA ATAGCCACAG GTTTGTGTGC
GAAGCATTTA TTTTTGCAAT TAAAAACTGG CTAGAGCAAC AACTGGGCAG GCACTTGCCT
TGGCAATTTG AGTTTAACTA CACCGCACCA GAAGCCATAG AAAATTACGA AGTGTACCTA
GGGGATAACC TTAAGTTTAA CCGACCCGTT ACCGCTATTC GCTTACCCAT TGAATATGCC
CATAGCAGCT GGCAAGTAAG CGAGAATTTT ACTTTACCCT GCGCAGCCAC CCCAGTTAGC
TTGCTAAATT TAGTGCGCCA ATTACTAAGA AACAACATAC AAGCCAACCC GAGTTTAGAG
TGGCTTGCAC AACAGTTAGA CATTAGCCCC GCCACATTAA AACGACGCCT TAAAGCCTGC
AATACGCAGT TTCGCGATTT ACTGAGCGAA ATTCGATTAG AAGTAGCGGT AGAACTTTAT
CAGCAACAAC ATTTTAGCAG CGATGCCATT TGCCAATACT TGGGCTTTTA CGACGAATCT
AATTTGCGCC GATTTTTTAA GCGCACCACC GGCCAAACAC ATACCCAGTA TTTGGCCTTA
ACCTAG
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| Protein sequence | MLNAANTVNS KMAYTQAAYS QALSSSAQTH YLLPSDKTIV AHWQPAILLN LMCNSLANEE
AIALSNKLLK GTRLFYSDFS KTNLFISPEQ FQRFIVNCNA TPNQSDLAFR FGQRLLPGHY
GDFSHGLNQV NSVFAAAELI QKCAHVFSPL LTPKVNVYAT ELTISFYSSY GCGNSHRFVC
EAFIFAIKNW LEQQLGRHLP WQFEFNYTAP EAIENYEVYL GDNLKFNRPV TAIRLPIEYA
HSSWQVSENF TLPCAATPVS LLNLVRQLLR NNIQANPSLE WLAQQLDISP ATLKRRLKAC
NTQFRDLLSE IRLEVAVELY QQQHFSSDAI CQYLGFYDES NLRRFFKRTT GQTHTQYLAL
T
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