| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4000 |
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| Symbol | |
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| ID | 3967419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 5034112 |
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| End bp | 5037030 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637923097 |
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| Product | hypothetical protein |
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| Protein accession | YP_529467 |
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| Protein GI | 90023640 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.463681 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGCTA AAAAAACGCC TTTGGCTAGC TTTTTACAAG CTTCCTTACA AAAACTTAAT
GCAACCACCA CACACGCAGC AGCCATAGGT GCTGTAACGT TATTAAGCCA AACGGCGTTT
GCCGATGGCA GTGTTAGCGG TAAGTTGTCC GATAAAAGTG GCAGCTACGG TATAGAAGGT
GCGTTAGTTA CAGTTAAAGA ATTGAATGTA CAAACCAGTA CTAACCGCGA TGGTCGATAC
AACTTGCCTT CACTGCCCAA TGGCGAGTAC ACCCTAGAGT TAAGTTATGT GGGTGCCGAT
ACTCAAACAC GCGCCATTGC CATTACCGAT AACGCCATTT TGGTGGAACA CTTTACTCTG
TCTTCAAACG CTACCGAGCA CGTATTGGTA ATTGGTGAAG CGGCGAGTTT AAACAAAGCG
CTTAACAAAC AGCGTGCGTC TAACAATATT GTTAGCATTG TAAATGCCGA TGCGATAGGT
AATTACCCAG ATGCAAACAC CTCTGAAGCC TTGCAGCGCT TGCCCGGTGT ATCAGTAGAA
AACGATCAAG GCGAAGGCCG CTACGTGCGC ATTCGCGGCT TGGGAGCCAA TTTTAACTCG
GTAACCATTA ACGGTAGCAA GGTGCCCTCC CCTAATGCGG GTGAGCGCGC AGTAGCGTTA
GATACCGTAC CGTCAGAGTT GTTGGAATCG CTCGAGGTAA CAAAAACCCT CACACCAGAT
ATGGATGCCG ACTCGTTAGG CGGCACCATT AACGTAAAAA GCTTAAGCGC ATTCGATCGC
GATGGCCGCT TTTATAAAGC AACGCTAGAA ACCAACTTTG ATGAACACAC ATCACAAGCC
AGCCCCAAAT TATCGTTAAC CGCTAGCGAC CTTTTTAGTA TTGGCGATGG CGCAGATAAT
TTTGGTGTTG CGGGTGCGCT TAGCTGGTAT GAACGCAAGT TCGGTTCCGA CAACGTAGAA
ACAGGCGGCG CGTGGGACGT TGCCGACAAT GCCGCAGACA CCCGCCTAGA AGAATTCGAA
CAAAGAGATT ACACCATTAG CCGCGAACGC CTAGGCGCAT CGCTTAATTT CGATTACCAA
GCTAACGATG TAACTAACTT ATTCTTACGC ACCCTTTACT CCGAATATAC CGATGCCGAA
GAGCGCCAAG CCAACGTGAT AGAAATGTAT CAGTTCGAGC GCGACGACTT GGGCGACATT
GTGCTGGATG ACGAAGGCGA TGAAGAAACC AACGACGGTA TACCTGCTAG TGAAACCGGC
GCAGCGACCA TTGCCAGAGA GCTAAAAGAT CGCACCGAAA CCATGAAAAT TAAATCGTTG
GTGTTAGGCG GTAAAAGCGA GTGGGATACG TGGGTAATAG ATTACAAGCT GGGTGCAAGC
CAATCTAGCG AGCACACGCC ATTTCATATT GATGGTGCGG TATTTGAAGC CGACTTCGAA
GAAGGTATAG GTTACAGCGC GGCTAAACAA ATTTACTTGC ATGCGCCTGC CGAAGTATAT
GCTGCAGAGA ACTACGAGCT AGATGAAATA GCTACCGCAC AACAAATTAC CAAAGACAAA
GAAAACAATA TTCAGCTAGA TATTACTAAG CGCTTACAGT TGGCAGGCAA CCCCCTTGCA
TTAAAGTGGG GGGCAAAACT AAGCCAGCGC GAAAAAACCA GTGACGAAGA AGTATGGGCA
TATTCAAACC TAGACGAAGT AGGCTTTACC GATGAGCAAC TATTGTTAAG TAACTACGTA
GCAACTAATA GTGGCGAAGC CCAAATAGAC TACCAGTTTG GGCCTATGGG CCAAGCTATT
GCAAGTCGCC CCCTGCTAAA TGCCATTAGC CCACTGGATA AAAGCGAATA TCACGAAGAA
ATAGATTCAG CCATAGCGGA TTTTACCGTT AACGAAGATA TTTCAGCCGC GTATGTAATG
GGTACCCTAG ATGTAGATAA ACTGCGTATT CTTGCTGGTG TGCGTGTAGA GCAAACAGAT
TTTACCGCCG CCGGTATGCA CTACAATGAA TACGAAGATG AAGGCGCTGA AATTGAAGAG
CTAACGGCAG CCTCTTTTAA CAACGATTAC AGCCATACAT TACCTTCACT GCACCTACGC
TATCTAATTG GCGAAAAAGT ACAATTGCGC GCAGCTTGGA CCAATGCCGT TGTGCGGCCA
ACCTTCGAAC AACTAAGCCC AGCAAAAGTG CGCGAAGGCG ACGAAGTGGA ATTTGGCAAC
CCACTACTTA AACCACTAGA AGCCTCGAAC CTAGATATTG GTATTGAATA CTACGGCGGT
TTTGCTAGCT ACTTTTCTGC GTTTGTATTC AGTAAAGATA TAGAAAACTT TGCGTACGCC
ATAGACCTAG GCGCCACTGC AGATGCAAGC CTTGTAGGCC CTGGCGAAAT ATCTGAAGCT
AACACTTTTA AAAATGGCGA TAGCGCCACC CTTACAGGTT TGGAGCTAGC CGCGAGTAAA
CAATTTTCGG AACTACCCGC CCCGTGGGAT GGCTTTTTAG TAAGCGCCAA CGCTACTTGG
ACCAGCTCTG AAGCGACTAT CGAGTATTTA GATGACGAAC TGTTTGCGCA GCGCGACATA
CACTTGCCAT CGCAATCTGA TTTTTCCGGT AACTTTGCTA TTGGTTATGA AACAGAAAAA
TTCAGCTTAC GTGTAGCGGC AAACTATAAA AGTGAATATC TGTTAGAAGT AAGTGACCCC
GCCGATGCAC AGGGCGATGC TTGGGTAGAT GCACAAACAG GTATCGACTT TCTAGCGCGT
TGGTATGCCA GCGAAAAAGT ACAGGTATTT GTGCAGGGTG TTAACCTAGG CGACCAAGGT
TACTATGTGT ATAGCGGCGA AGGCCAAAAA GATTACAACT TCCAATACGA AGAGTATGGC
CCAAGTTTTA GACTAGGCGT AACAATTACT GATTTTTAA
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| Protein sequence | MRAKKTPLAS FLQASLQKLN ATTTHAAAIG AVTLLSQTAF ADGSVSGKLS DKSGSYGIEG
ALVTVKELNV QTSTNRDGRY NLPSLPNGEY TLELSYVGAD TQTRAIAITD NAILVEHFTL
SSNATEHVLV IGEAASLNKA LNKQRASNNI VSIVNADAIG NYPDANTSEA LQRLPGVSVE
NDQGEGRYVR IRGLGANFNS VTINGSKVPS PNAGERAVAL DTVPSELLES LEVTKTLTPD
MDADSLGGTI NVKSLSAFDR DGRFYKATLE TNFDEHTSQA SPKLSLTASD LFSIGDGADN
FGVAGALSWY ERKFGSDNVE TGGAWDVADN AADTRLEEFE QRDYTISRER LGASLNFDYQ
ANDVTNLFLR TLYSEYTDAE ERQANVIEMY QFERDDLGDI VLDDEGDEET NDGIPASETG
AATIARELKD RTETMKIKSL VLGGKSEWDT WVIDYKLGAS QSSEHTPFHI DGAVFEADFE
EGIGYSAAKQ IYLHAPAEVY AAENYELDEI ATAQQITKDK ENNIQLDITK RLQLAGNPLA
LKWGAKLSQR EKTSDEEVWA YSNLDEVGFT DEQLLLSNYV ATNSGEAQID YQFGPMGQAI
ASRPLLNAIS PLDKSEYHEE IDSAIADFTV NEDISAAYVM GTLDVDKLRI LAGVRVEQTD
FTAAGMHYNE YEDEGAEIEE LTAASFNNDY SHTLPSLHLR YLIGEKVQLR AAWTNAVVRP
TFEQLSPAKV REGDEVEFGN PLLKPLEASN LDIGIEYYGG FASYFSAFVF SKDIENFAYA
IDLGATADAS LVGPGEISEA NTFKNGDSAT LTGLELAASK QFSELPAPWD GFLVSANATW
TSSEATIEYL DDELFAQRDI HLPSQSDFSG NFAIGYETEK FSLRVAANYK SEYLLEVSDP
ADAQGDAWVD AQTGIDFLAR WYASEKVQVF VQGVNLGDQG YYVYSGEGQK DYNFQYEEYG
PSFRLGVTIT DF
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