Gene Sde_3996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3996 
Symbol 
ID3967415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp5029533 
End bp5030024 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content47% 
IMG OID637923093 
Productglycyl-tRNA synthetase, beta subunit 
Protein accessionYP_529463 
Protein GI90023636 
COG category[S] Function unknown 
COG ID[COG3238] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.318499 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTGTTTG TGTTCACAAC TGAAGGCAAC CTTATGCAAC ATACCATCGC TATTTTACCC 
GCCATGCTTG CGCTGTTAGC TGGGGCTGCT ATTGCTGTGC AAGCCAGCCT TAACGCCAAG
CTTGGGGTAC TTATTCACCA CCCACTTATA GCTACCAGCG TAGCCTTTAG TTGCGCTGCT
TTGTGTGCCG TTGCAATGGT ACTTATTACC ACACGGTATT ATCCGCCCTT ACACCTCATT
AAAAGCGTGC CCATTTATAT GTGGTTTAGT GGCGGGTTAC TTAGCGCATT TGGTGTGGGT
ATGTTTTATT TTTTAATCCC AAAAATGGGA GTAGGGTCGT TAATGAGCTA CGCCCTTACA
GGGCAAATAG TTATTGCTAT TGTTGCTAGC CATTTCGGTT GGTTTGGTTT ACCGCAAGCC
ACTATTACCG CCACCAAAGC TTGCGGCATG TTCGCCCTTG TGGGCGGCAT AGTGCTAATT
AATTGGGTGT AG
 
Protein sequence
MVFVFTTEGN LMQHTIAILP AMLALLAGAA IAVQASLNAK LGVLIHHPLI ATSVAFSCAA 
LCAVAMVLIT TRYYPPLHLI KSVPIYMWFS GGLLSAFGVG MFYFLIPKMG VGSLMSYALT
GQIVIAIVAS HFGWFGLPQA TITATKACGM FALVGGIVLI NWV