| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3960 |
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| Symbol | |
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| ID | 3967264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4990506 |
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| End bp | 4991528 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637923057 |
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| Product | LacI family transcription regulator |
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| Protein accession | YP_529427 |
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| Protein GI | 90023600 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.292064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTAAGC CAACCAAAAA GCCCACACCA CAAATGTCTG ATATTGCTCG CCTTGCCGGT
GTATCTAAAT CGACAGTATC GCGGGCGCTG GCTAATTCAC CACTGGTAAA TCAAGAAACA
AAAGACTTAG TACAAAAAAT TGCTCGCGAG CAGAATTATC GCCTGAACAC AGTAGCGCGT
AACTTTAGGC TGAAAGAGTC GCTTACCATT GCTGTACTTA TTCCCTCCGC AGGTAACGCT
GGCTGGCGCC TATCAGACCC ATTCTTTCTT GAGTTACTTG GCTCAATTGC AGAAGCGGTA
GATCGCCACG ACCATCAACT ACTACTTTCG CGTACATCTG CGCAAGATAG CGATTGGATT
GAAGACTTTG TTAATAAACG CAGGGCCGAC GGCATAATAT TGATTGGTCA GGGCTCGCAA
CACGAGGCAA TTAATAAGCT AGCCGCAACA TTTAAAGCTA TTTCAGTTTG GGGCGCTAAA
ATAGATGAGC ACCAGCACTA CCCGGTAGTG GGTAGCGATA ATGTATTGGG CGGCCATAGG
GCTACCGCAC ATTTAATTGA GCGCGGGCGT AAGCGTATTT TATTTTTAGG CTATAACACG
CTGCCCGAAG TATCGCAGCG TTATAGAGGC TATTGCGATG CTCATGCCAG CGCAAATCTC
GCCATTGACC CTAAACTGCA AGTAGCGACG GGTTCAGACG AATCTGATGG CTACCTCGCG
GTTATCAACG CTATTGAATC CAATATTGAC TTTGACGGCG TGTTTGCTGT GAGTGATGTA
CTGGCTATGT CGGCAATTCG GGCACTGCAG GAACGAAAAA TATCAGTCCC TAAAGATGTT
TCTGTTGTGG GTTACGATGA TATTGCCTTA GCAAGCTACT ACAACCCGCC AATTACCACC
ATCCACCAGA ACCGCTCTGC GGGCGGAAAA ATTTTAGTGG ATAACTTACT AGAAGCAATA
GAAGGGCATA AGCCAGAAAT GATAAGCTTG AACCCTGAAC TTATTATTCG GGGCTCAAGC
TAA
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| Protein sequence | MSKPTKKPTP QMSDIARLAG VSKSTVSRAL ANSPLVNQET KDLVQKIARE QNYRLNTVAR
NFRLKESLTI AVLIPSAGNA GWRLSDPFFL ELLGSIAEAV DRHDHQLLLS RTSAQDSDWI
EDFVNKRRAD GIILIGQGSQ HEAINKLAAT FKAISVWGAK IDEHQHYPVV GSDNVLGGHR
ATAHLIERGR KRILFLGYNT LPEVSQRYRG YCDAHASANL AIDPKLQVAT GSDESDGYLA
VINAIESNID FDGVFAVSDV LAMSAIRALQ ERKISVPKDV SVVGYDDIAL ASYYNPPITT
IHQNRSAGGK ILVDNLLEAI EGHKPEMISL NPELIIRGSS
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