| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3957 |
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| Symbol | |
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| ID | 3967261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4986250 |
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| End bp | 4987164 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637923054 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_529424 |
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| Protein GI | 90023597 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.770082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAG AAACAATAGA CCTGAAGTTA CTCCACTATT TTGTCACCAT TGCCGAATCA
CTCAGCTTTA CCGCTGCGAG TGAATCCCTA AATATTGCTA AATCTGCGCT TAGCAAAGGC
ATTAGCAAGC TGGAGGATGA ACTCGGCACA AAGGTGTTTG AACGCTCTTC AAGGGTAGTA
CGGTTAACCG AGGCGGGTCA GATTTTGTAC CACCGCGCTG AGGTGTTACT TGAAGACGCA
GACCACCTAG TAAGCGATAT TAAAACACTG CAAAACAGTG TATCCGGCCA TTTAAAAATT
GCCGCACCGC CCACGTTGGG CCGCATGCTG GCGGCAGAAA TTATTCCGCC TTTTTTAAAA
CAATGGCCCG ACGTGTCTAT ATCGTTAAAG CTCTCTTACG ATTACGAAGA CCTGTTTAAA
GAAGGGTTGG ATTTAGCCTT TCGCATGGGC GTTAATCGCG ACCAAAACTT AATTGAGCGC
CCGTTAGGCC GAGCAAACCG TGTAGTGGTA GCAGCGCCCG ATTACCTCGC ACAACACGCC
CCCATCCGCA CACCCCACGA TTTACTACCA CACAAAAGCT TGCAGTTTAG TAACCACATA
CCGCAGGAGT GGACACTACA AAACCGGGCT AAGGTTGAGC ATGTAACGCT TAGCGTGGCA
CTGCAATGCT CAGATTTAGC CGCCTTACGC AACGCCGCCC GCGCAGGCCT AGGTGTAGCC
CAATTGCCCT GGATGCTAGT AAGAGACGAT ATTAACAACG GCCACCTAAC ACACGTACTG
CCACAATGGC TAAGCACGGG TTTACCCATA GCGCTGGTGT ATAAAGAAGG GCACAGAAAA
GCCGCAAAGC TAGCGGAATT TTTGAAGTTT GTGGAAGCTT ATAAACAATT ATTTGAGCTT
AGATTTGGCG AATAG
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| Protein sequence | MQKETIDLKL LHYFVTIAES LSFTAASESL NIAKSALSKG ISKLEDELGT KVFERSSRVV
RLTEAGQILY HRAEVLLEDA DHLVSDIKTL QNSVSGHLKI AAPPTLGRML AAEIIPPFLK
QWPDVSISLK LSYDYEDLFK EGLDLAFRMG VNRDQNLIER PLGRANRVVV AAPDYLAQHA
PIRTPHDLLP HKSLQFSNHI PQEWTLQNRA KVEHVTLSVA LQCSDLAALR NAARAGLGVA
QLPWMLVRDD INNGHLTHVL PQWLSTGLPI ALVYKEGHRK AAKLAEFLKF VEAYKQLFEL
RFGE
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