| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3939 |
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| Symbol | |
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| ID | 3967204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4964401 |
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| End bp | 4966167 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637923036 |
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| Product | response regulator receiver domain-containing protein |
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| Protein accession | YP_529406 |
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| Protein GI | 90023579 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.238688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTTTA GCGTGCAAAT GGCTGTGGCT CAAGTAAAAA CACCGGCAGA TGGCAAGTTA
GTTATTCAGC AGGGGCTAGC TTTTTTAGAA GATAAAAGCG GCGCACTAAG CTTTGAGGAT
GTTCAAACGC GTGGTGATTG GCAGTTACAA GCATCGGGGA ATTTCTCGCA GGGGTATAAC
CGTTCCGCTT GGTGGCTTAA GTTTGAATTG CTAAATACTC AGCAGGCGAA TATCTGGCTG
TTAGAGGTGG CCTACCCCAT TCTAGATTAC GTAACCGTAT ATGTTGGCAA CCCGCAAGGG
GTATACACCA AAGTAGAAAT GGGCGATAAG CTGCCGTTTG ATTCTCGGCC AATTAAACAT
CGCAACTTTT TGGTGCCGCT GGATTTAACT AAGCGCGAGC CAGTAACTAT TTATATTCGG
GTCGCTTCCA GTAGCTCTGT CCAGTTTCCG TTAGTATTGT GGGAGCCGAA GCGCTTTTCC
GAATTTCACT CCAACGAATA CTTACTGCAT GGTTTTTTAT TTGGTGGTTT GTTTGTTATC
GCGCTCTATA ACTTTCTAGT TTTTACGGTA CTGCGCCAGC GCGCTTATAT TTACTATGTG
GCCTATATTA CTTGCCTAAC AGCGTTTGCG GCGAGTTTAA GTGGTTTGAG CTTTCGTTAC
CTATGGCCCA ATGCAACACT GTGGAACGAT ATATCAATTT TGTTTTCGCT TGCCGGTTTG
GTGCTGTTTG CCAGTATATT TTGTTGGGTG TTTTTAGATG TAAAAACATT TAGGCAAAAG
TTCGTCATTT ACTGCTTCCA ATTCTACTTT GTTGTTTTGC CGTTGCTTAT CGTCGGGGTG
TTTATTTTCC CGTATTACAT AATGATAAAA CTGCTAATTT TGTTTGGTGT GTTGGCATGC
GGTTTGGGGT TTGCTGCAGG CATAATTGCA TGGCTAGAAG GGCGCCCCTC GGCAAAATAT
TACACCGTAG CTTGGGCGCT GTTTTACAGT GGCGGCATAG TGTTGGCACT TACTAAGCTC
GCAATTATTG AGCAAACTAT TTTTTCTGAA AATGCGTTGC AGTTCGGTTC GCTAATAGAA
GCTGTGCTAC TTAGTTTTGC ATTGGCGGAG CGTATGAACA TCGAGCGTGC ATTGCGGCTA
GACGCTCAAA AGCGCGCCTA CGATATTGAG TATCAAGCCA AAATAGAATT AGAAAAGCGT
GTAATAGATA GAACCGAAGA ATTGGAGCTA GCCAATGAAA AACTGCGCGA ACTTAGCGAT
ACAGACCAGC TTACGGGTTT AAAGAATCGT CGCTTTTTAA ACCACTACCT AGAAGACGAA
TTTGCGCGCA GTTGCCGTTA TGGCCATCGC ATGAGCATTC TTTTGGTAGA TATAGATAAA
TTTAAGCATA TTAACGATAA CTATGGGCAC ACCGTTGGGG ATACCTGTAT TCAGGCTATT
GCCAAAGTAT TGTTGGAGTC AAACCGCCAG CCATCGGACC TAGTTGCCCG CTACGGTGGT
GAAGAGTTTT GCATTGTATT ACCCGAAACA GATGTAGAAG GCGCATTACA CGTAGCAAAT
AGGCTGTTAG ACATGGTGCG CAATACGCCT ATTTACGCCG CAGCAAATAC TATTAATGTA
ACGTGTAGCA TAGGCTGTTA CACGGCTGTG CCCAATTCGA CTAAGCAAAT AATCGCTTTT
ATCGATAATG CCGATACTGC GCTGTACGAA GCTAAAAAGA CAGGCAGAGA TAAAGTTGTG
GTGTATAAGG ACGACAACCC CCTGTGA
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| Protein sequence | MFFSVQMAVA QVKTPADGKL VIQQGLAFLE DKSGALSFED VQTRGDWQLQ ASGNFSQGYN
RSAWWLKFEL LNTQQANIWL LEVAYPILDY VTVYVGNPQG VYTKVEMGDK LPFDSRPIKH
RNFLVPLDLT KREPVTIYIR VASSSSVQFP LVLWEPKRFS EFHSNEYLLH GFLFGGLFVI
ALYNFLVFTV LRQRAYIYYV AYITCLTAFA ASLSGLSFRY LWPNATLWND ISILFSLAGL
VLFASIFCWV FLDVKTFRQK FVIYCFQFYF VVLPLLIVGV FIFPYYIMIK LLILFGVLAC
GLGFAAGIIA WLEGRPSAKY YTVAWALFYS GGIVLALTKL AIIEQTIFSE NALQFGSLIE
AVLLSFALAE RMNIERALRL DAQKRAYDIE YQAKIELEKR VIDRTEELEL ANEKLRELSD
TDQLTGLKNR RFLNHYLEDE FARSCRYGHR MSILLVDIDK FKHINDNYGH TVGDTCIQAI
AKVLLESNRQ PSDLVARYGG EEFCIVLPET DVEGALHVAN RLLDMVRNTP IYAAANTINV
TCSIGCYTAV PNSTKQIIAF IDNADTALYE AKKTGRDKVV VYKDDNPL
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