| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3933 |
|---|
| Symbol | |
|---|
| ID | 3967198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4954062 |
|---|
| End bp | 4955249 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637923030 |
|---|
| Product | ATP synthase F1, beta subunit |
|---|
| Protein accession | YP_529400 |
|---|
| Protein GI | 90023573 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATACTA CCTTACAACG CCCCTTACCC GCGCTTTCTA CACTGTTAAT TTGTGCTGCA
ATAGTGGCCG CCAGCGCCTT AGTTGTATTT TTAATTAATA GTACAGAACC CAAAGCAGAG
CGCGAAGCCG CTACCCGTAA TGCCGCCATG CCGGTTGAAG TAATCCAAGC AGACTACGGC
ACCTTTCAAC CCACAATTAT TGCCATGGGC ACGGTAAAGG CAGATGAAGA CTTGCTTTTG
CGGCCTCGCG TTAGCGGCCA AGTCATTGAA CGCGCACCGC AGTTCGTACC CGGCGGCTAT
GTTAAAAAGG GGGATGTGCT GCTGCGCATA GACCCTACCG ACTATAAACA CGCGCTGGAT
TTGCGTCACA GCGAGCTCAT AAAAGCGCAA AGTACCTACC AGTTAGAGCA AGGTGAGCAA
TCCATAGCCG AGCGCGACTA CAAACAATTG AACAAGAATC TCGACCCGAT GCAGCGCTCG
CTGGTTTTGC GCGAACCGCA ATTAAAAGCT GCCGAAGCCG CAGTTAAAGC TGCGCAGGCA
AATTTGGCAC AGGCGCAGTT GGACCTAGAC CGCACCACAA TCCGCGCCCC ATTCGATGCC
CAAATACTCT CGCGCGAGGT GAGCGTAGGT AGCGAGGTTT CCCCAAGCGA CACGCTAGCA
CACCTTATAG GCCTGCGAAG CTATTGGGTG GAAGCATCTG TACCCAGCGA TAAAGTGCGT
TGGTTGCCGC CCGCTAATGC CACCAAAGTA AACGTTCGCC GTCGCGACTG GCCAACACCA
CGGGTTGGCG AGCTGCGCAG TGTTATAGGT GCGCTGGAAG AAAATACGCG CATGGCACGG
GTGTTAATAG AAGTTGCCGA CCCCTTGGCC CTTACCAATA GTAACGAGCT AGCACTTGCA
GTAGGCACCT ATGTTGAATG TGAGCTGCCC GCGCGCACAT TAACCGGAGT GGTAAGGCTT
AACCGCGATT ATTTGCGCAA AGGCGACACC ACCTGGGTAT TCGAAAACAA CACGTTAAGC
ATCCGCAAAC TGGAAATACT CTTTCTCGAT GCCGAATTCG CCTATGTAGG CGATGGTCTA
GCCGAAGGCG ACATGATCGT CACCACCTCG CTTTCCAGCA TAAAGGAAGG CGCTGAACTG
CAACTAAAAA GTAACGCAGA CGCAGTAGGT GCAACTAGCC ATGAGTAA
|
|---|
| Protein sequence | MNTTLQRPLP ALSTLLICAA IVAASALVVF LINSTEPKAE REAATRNAAM PVEVIQADYG
TFQPTIIAMG TVKADEDLLL RPRVSGQVIE RAPQFVPGGY VKKGDVLLRI DPTDYKHALD
LRHSELIKAQ STYQLEQGEQ SIAERDYKQL NKNLDPMQRS LVLREPQLKA AEAAVKAAQA
NLAQAQLDLD RTTIRAPFDA QILSREVSVG SEVSPSDTLA HLIGLRSYWV EASVPSDKVR
WLPPANATKV NVRRRDWPTP RVGELRSVIG ALEENTRMAR VLIEVADPLA LTNSNELALA
VGTYVECELP ARTLTGVVRL NRDYLRKGDT TWVFENNTLS IRKLEILFLD AEFAYVGDGL
AEGDMIVTTS LSSIKEGAEL QLKSNADAVG ATSHE
|
|---|
| |