| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3916 |
|---|
| Symbol | |
|---|
| ID | 3967181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4936462 |
|---|
| End bp | 4937250 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637923013 |
|---|
| Product | regulatory protein, DeoR |
|---|
| Protein accession | YP_529383 |
|---|
| Protein GI | 90023556 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1189] Predicted rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00126237 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAC TTCTCTCTCC TATGGAACGC ATCGACGCGG TTATGGTAAG TCGCGGCCTT
GTGGATTCGC GCTCGCAGGC CAAACGATTA ATTGATGCGG GTAAGGTGAG CGTGGTGGTG
GCTGGCGAGA TGGAAATTGC GCGTAAAGCG GCAGCAAAAG TGTTTGCCGA TGCCGAAATA
GTGATAGAAA AAACAGAAGA AGATACCTTT GTATCGCGCG CGGCGCTTAA GCTGCAGGCG
GGGTTAGATT TATTGCCCAG CGAATTTTGC CAAGGTGTGA TAGCGCTGGA TGTGGGCCAA
TCCACGGGGG GCTTTACCGA GTGCCTACTG CGGCGCGGCG TGCAATTGGT GGTGGGGTTA
GAAGTTGGCC ACGATCAGCT CAGCCCAAGC TTGCGCAACA ACCCACAGGT TGTGTGTTTA
GAGGGGGTGA ACGCCCGCTA CCTAGATGAC GTGCCTTTAA AAGAATATGC ACCACATGGT
TTTGATATAG CGGTGATGGA TGTGTCGTTT ATATCACAAA CTCTAATATT GCCCGCGCTG
GCGCCTGTGT TAAAGCAAGG GGGCCTGTTA GTATCGCTGG TTAAGCCGCA ATTTGAAGTG
GGCAAAGCGG CGGTGGGTAA AGGTGGCATT GTTAAAGATG CGTCTTTACA TGAACAAGTA
AAAATAAAAA TAGAAGCTTG TGCCCAGCAA TTGGGATTTG AGCTACTGCA CTATATTCCA
AGCCCTATTA CAGGTGGCGA TGGTAATCAC GAATTCATAT TAGTGGCGCG CGCCACTTCC
TGTATTTAG
|
|---|
| Protein sequence | MSQLLSPMER IDAVMVSRGL VDSRSQAKRL IDAGKVSVVV AGEMEIARKA AAKVFADAEI
VIEKTEEDTF VSRAALKLQA GLDLLPSEFC QGVIALDVGQ STGGFTECLL RRGVQLVVGL
EVGHDQLSPS LRNNPQVVCL EGVNARYLDD VPLKEYAPHG FDIAVMDVSF ISQTLILPAL
APVLKQGGLL VSLVKPQFEV GKAAVGKGGI VKDASLHEQV KIKIEACAQQ LGFELLHYIP
SPITGGDGNH EFILVARATS CI
|
|---|
| |