| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3892 |
|---|
| Symbol | |
|---|
| ID | 3967117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4912509 |
|---|
| End bp | 4914161 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637922989 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_529359 |
|---|
| Protein GI | 90023532 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0718789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT GTTGTATCAA GTTTTTTACC ACACTCTGTA CTGCTGTTTA TGTACTGGGT
TGTGGCGCGT TAGCGCATGC GCAAACTGGC CCGGCGGGTT ATAACTACGC TGCTGCCGAA
AACGAAACGG TGTATTTAAA CGGAACCACC AACGTTGCCT ACGGCGCGAA TGGCTCGTTT
TATTACGCTT ACAATCAAAC CGGTTCGGTT AATTGCTCTA ATCAAACCTT TGGCGACCCT
ATTTTTGGGG TGCGCAAAGC GTGTTACACC CAGCAAGTGG CGAGCAATAA CCCGCCGTCG
GTTTCGTTTG CTAGCCCAAC GGGCAACCTA ACAGTCGACG AAGGTTATGC TCTTTCTGTA
ACCGTGAACG CCAGCGATAG CGACGGCAGC ATTGCCAGTG TAGAGCTGTT TATTAACAAC
CAATTAGTAC GACAAGAGCT TTACGCACCT TACGAGTGGG GCGCAGCTGC TGAGCCAGAC
GAATTAAATG GCCTACCCGT TGGTACACAC ACAATAAAAG CGGTAGCCAC CGATAACGAC
GGCGACACCA AACAAGCTAG CTTTAAGCTA ACGGTACGCG GTGCGGCGGT AGATGTTCCT
GGCTTGGTAC AAGCGGAGGA TTACACAGGC TTTTACGACA CAACCAATGG CAACACTGGT
GGTGCGTATC GCAACGACAA TGTAGACGTA GAAACCACAA GCGATAGTAA CGGTGGTTAC
GACGTAGGTT GGTTTGCGGC AAACGAATGG CTGGAATACC CCATTAACGT TACCGAAGCG
GGCAATTATG TATTAGAAGC ACGCGTCGCA TCTGCTGTAG GCGGTGGTAT GTTTACCGCA
GAAATAAATG GCAACAACAG CAGTACATTT AGCATAGGCA ATACCGGCGG CTGGCAAAAT
TGGCAAACCC TGAATAACAA TATTGGCAAT TTAAGCACCG GTAAAAAAAC GTTACGCATT
CAAGCGCAAA GCGGAAACTT TAATTTAAAC TGGCTGCGCC TCAAGCGTGC CACAACCTCT
GTGTGCACAC TTAATACTCC TGCCGAAAAC ATTCCAACGC CATTTAATTT ATTTACCGTT
ATCGATACAG ATTTAAACCG CTACGAATTC TGTAAAGCGT CTAAATGGTT TGAGGAATCT
AACGGTAAAC AAGTGTTTAA ATTATTTACC GGCGACAACC TAGCAGATAA CGTACCTGGC
GCCCGCGTAC ATGCTCGCAC AGAAGCTGGC CAAGGGCTTA AGTTTAAAGC AGGCTCCACA
TGGCACACCT TTGAAGCCAG AATGAAACCC AGCAAAAAGT TAGACTACAC TTACACCATT
GCTCAATTGT TTGCCGGCTG TTGCGGGCCG CAGTTGCGCA TTGAAGTAAA ATCTAACGGA
CGCATCCACA TGGGGTCGCG CGGTAACGGC AATATTCGTA TTAGTGACGA CCAAGATTAC
GCCAACGGCT CTAGATCGTT CAAAATTAAA ATTCGCACCA ATGGCGATCA GTTCGAAGTG
TATTTTAACA GCAGCAAAAA GTTCAGCGGC CGCACAGACG AAGCCAAGAA CGGCAATACC
AGTGCGCTTT ACCACTTCCG CTGGGGTGTA TATTCCAACG AAGTAATGAG CGAAGATTTA
TCTAACACTG TTACAGAAAT TATTCGAAAT TAA
|
|---|
| Protein sequence | MKSCCIKFFT TLCTAVYVLG CGALAHAQTG PAGYNYAAAE NETVYLNGTT NVAYGANGSF
YYAYNQTGSV NCSNQTFGDP IFGVRKACYT QQVASNNPPS VSFASPTGNL TVDEGYALSV
TVNASDSDGS IASVELFINN QLVRQELYAP YEWGAAAEPD ELNGLPVGTH TIKAVATDND
GDTKQASFKL TVRGAAVDVP GLVQAEDYTG FYDTTNGNTG GAYRNDNVDV ETTSDSNGGY
DVGWFAANEW LEYPINVTEA GNYVLEARVA SAVGGGMFTA EINGNNSSTF SIGNTGGWQN
WQTLNNNIGN LSTGKKTLRI QAQSGNFNLN WLRLKRATTS VCTLNTPAEN IPTPFNLFTV
IDTDLNRYEF CKASKWFEES NGKQVFKLFT GDNLADNVPG ARVHARTEAG QGLKFKAGST
WHTFEARMKP SKKLDYTYTI AQLFAGCCGP QLRIEVKSNG RIHMGSRGNG NIRISDDQDY
ANGSRSFKIK IRTNGDQFEV YFNSSKKFSG RTDEAKNGNT SALYHFRWGV YSNEVMSEDL
SNTVTEIIRN
|
|---|
| |