| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3870 |
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| Symbol | |
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| ID | 3967037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4875936 |
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| End bp | 4879751 |
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| Gene Length | 3816 bp |
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| Protein Length | 1271 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922967 |
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| Product | glycosyl hydrolase family chitinase |
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| Protein accession | YP_529337 |
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| Protein GI | 90023510 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3325] Chitinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.762403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.150806 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTAA CTAAATTTGC AGTGGCTGCA CTTAGTGTTG CCGTACTTTC TGCATGTGGC
GGAGGCGCCG GTAACAGCCC TAGCCCCGGT GCAGGTTCCA ATACAAATAC TGAGTCGGCA
TCTAGCAGCT CCAGTTCCAG CTCTAGTTCT AGCACAAGTT CAACATCCAG TTCTTCTTCC
AGCTCTAGTG GTTCAGCAGA AGTAAATGTA GATATTGACG TTGATATCGA TGTGGAAAAC
GGCTCTAGTT CGAGCAGCTC ATCAGGCTCT AGCTCGTCTA GCACGGGCGG TGGCGATATT
ACTATTATTG ACGAAATAGA GAGCTCGACC AGTTCTTCTA CGTCTAGCTC AAGTTCCAGT
GGCGCAACAA GTTCAAGCAG TACTTCTTCG TCTAGCAGTT CTTCAAGCAG CTCTAGTTCA
TCTGGCGCTA CCGGCTCGTC ATCTAGCAGC TCTGGTGCGG GTAGTACTAG TTCATCATCA
AGCTCTAGTA GCTCAAGTTC GTCTTCTAGT TCATCGTCAA GTTCTTCAAG CTCTTCTAGT
TCATCAAGCA CGGGCGGTGG CAATGCGGGT GTAGATGCCG AATTGGGTTA CAGCATTGGC
GACGTCTATG CGCCAAGCTT TGATTACACC GCAGTAGGCG GCGAGCGCAA AACAGATAAC
TACCGCGTTA TTGGCTATTA CATGCCAAGT TTAGATGGTT CGTTTCCGCC TAGCGCAATT
GGTGAGCAAC AAGCGCAAAT GCTTACCCAT ATTAACTATG CATTTATTGG TATTAACAGC
CAGCTAGAGT GCGATTTTAT AGATGTAGAA AAAGCCGACG CAGAAACTCA AATTATTGCT
GAGTTACAAG CACTAAAAAA TTGGAATGCC GATTTAAAAA TCCTTTTTTC TGTAGGGGGT
TGGGCAGAAT CTAACGACGC AGCCGAAACC GTTAGCCGCT ACCGCGATGC GTTTGCACCG
GCAAACCGCG AGCATTTTGT TAGCTCGTGT GTAGCCTTTA TGCAACAACA CGGCTTTGAT
GGCATAGATA TAGATTGGGA ATACCCTCGC GCCGAAGATG TAGATAACTT TATTGCCGGC
CTAGCAGCAA TGCGCAACCA ATTGGATGCA CGCGGCAACG GCGAGCTAGT TACCATTGCT
GGCGCAGGCG GTGCGTTCTT TTTAAGCCGT TATTACAGCA AGCTAGCTGC CATAGTAGAA
CAGTTAGACT TTATAAATTT AATGACCTAC GACCTAAACG GACCGTGGAA CGGCGTAACA
AAAACTAACT TTCACGCACA CCTGTACGGC AACAACCAAG AGCCGCGCTT TTACAACGCG
CTGCGCGAAG CAGACCTTGG TTTAACGTGG GAAGAAATAG TAGAGCGTTT TCCTAGCCCG
TTCGAGCTCA CCGTAGATGC CGCCATTAAA CAACATTTAA TGATGGATAT TCCGCGCGAA
AAAATTGTAA TGGGCGTACC TTTTTACGGT CGTGCATTTT TTAACACAGG TTCATCAAAC
ACCGGTTTAT ACCAAACCTT TAACACCCCA AATGGTGACC CCTATGTAGG TGACGCTAGC
TTATTGGTTG GTTGTGAAGC CTGCGAAGCG CGCGGCGAGC CACGCATTGC TACCTTTAAC
GATATTCAAC AACTTATAGA AGGTAACTAC GGCTATACCC GTCACTTTGA TGATCAAACC
AAAGCGCCTT GGTTGTATCA CGCAGAAAAT AATATATTTG TAACCTACGA CGATGCTCAA
TCGTTGGTGT ATAAAACCGA TTATATTAAA CAACAAGGTT TAGGCGGTGC GATGTTTTGG
CACCTAGGCC AAGATGATTC GCAATTTACT TTATTGGCTA CTTTACACAC CGAGCTAAAC
GGCGCAAACG CTGGTAGCCT GCAAGGTGGC AATAGCGAAA CCGACAACAC AACGGACGAA
ACAGAAGGCA ATAACGAAGA CAACACCGAA CAAAACCCAG AAGAAAATAC CGATACTGAA
GAAACAGAAA CAGAAACAGA AACAGAAACA GAAACAGAAA CAGAAACAGA AACAGAAACA
AGCGTAGAGC AACCCACTGC GCCAACAATA GCTTGGATGA ACACAAGCTA TACCGGCAGC
AGTGTAACGG TCACTATTAC GTGGAATATG TACTGGGGTA CAAACGGCAA CCAATGGCAG
CTATGGTTAG ATGGCGAGCA AGTGTATTCA GCCAACTTAA CTACCAATGG CCAAAATGCA
CAAACCGACA GCAAAATCAT TACTATTACT GGCGCAGGTG CTCATAGCGT TGAAGTTAAA
CTGTGTAACC AGCAAGATAT AAATGTTAGC TGTGCTAGCG ATAGCGAAAC TATCACTTTG
CAAGGCGGTA GTGATGGCGC AACGTCTAGT TCTTCTTCCA GCACGTCGTC AAGCTCTAGT
AGCTCGTCTT CTAGTACTGG TGGTTCAACG TCGAGCACAA GCAGCTCCTC TAGTTCTACT
AGTTCATCGA GCAGTTCATC TAGCTCTAGT AGTTCAAGTA CATCGGGTGG CGGCGAAACA
GATTTATCTG GCGTGGTTTA CGGCGAGTAC AACAACACTT ACAAACAGAC GAGCGATAAA
ATAATTGTTA CTTACTTTGT AGAGTGGGGC ATTTATGGCC GCGACTATCA CGTAAATAAT
ATTCCGGCGT CTAACCTTAC GCACGTACTG TTTGGCTTTA TTGCAATGTG TGGCGATAAC
CCACACGCCT CAGGCGGCGC GCAAGCGGCT ATTGCTAGCG AGTGTGCAGA TAAGCAAGAT
TTTGAAGTTA CCTTGGTAGA TCGTTTCGCC AACCTAGAAA AAACTTACCC AGGCGATACG
TGGTACGACG ATACAACCGG TCAAGATTAC AATGGTAACT TTGGGCAACT ACGCAAACTA
AAAGCACAGC ACCCGCATTT AAAAATATTG CCATCTATTG GCGGCTGGAC AATGTCTACC
CCATTTTATG AAATGGCAAA AAATGAAGCT AACCGCGCAG TGTTTGTTGA ATCTGCCGTT
AACTTTATTA AAAAATATGA CTTCTTCGAC GGAGTAGATA TAGATTGGGA ATACCCTGTA
TACGGCGGTA CAGCCCCAGA ATTATCTACC GCTGCCGACC GCGATGCCTA TACCGCCTTA
ATGCGTGACC TACGCGCAGC ATTAGACGAG CTGGCAGAAG AAACGGGTCG CGAATACGAA
ATTACTTCGG CCGTAGGTGC AGCACCAGAA AAAATTGCAG CAGTAGATTA CGCCAGTGCC
ACAACGTATA TGGATTACAT ATTCCTAATG AGCTACGACT ACATGGGCGC ATGGGCGAAC
ACAACGGGTC ACCACACCCC GCTGTACAAC AACAACGAAG AGCGAGAAGG TTTTAACACA
CATGCGTCTG TGCAAAACCT ATTAACCGCA GGTGTGCCTT CATCCAAATT AGTCGTGGGT
GGTGCATTCT ACGGCCGCGG CTGGGTAGGC ACCCAAAATA CCAACGCTGC CAAAAGCGAT
TTATTCCCGC TATATGGCCA AGCTTCTGGC GCGGCAAAAG GCACCTGGGA AGCAGGGGTA
CAAGACTACC GCGACCTGTA CGACAACTAT ATTGGCACCA ATGGCACAGG CATTAATGGC
TTTAGCGCAC ACTACGACGA AATAGCCGAA GCCGCCTACC TTTGGAACAG CAGCACCGGC
GAATTTATAA GCTACGATTC GCCGCGCTCT ATTGCAGCAA AAGCCGATTA CGTAAAACAA
TACAATCTAG CTGGCATGCT AACCTGGGAA ATAGACGGCG ATAACGGCCA ACTACTCAAC
GCCATTAACG AAAGTTTCGG CAACGAAAAG CAGTAG
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| Protein sequence | MNLTKFAVAA LSVAVLSACG GGAGNSPSPG AGSNTNTESA SSSSSSSSSS STSSTSSSSS
SSSGSAEVNV DIDVDIDVEN GSSSSSSSGS SSSSTGGGDI TIIDEIESST SSSTSSSSSS
GATSSSSTSS SSSSSSSSSS SGATGSSSSS SGAGSTSSSS SSSSSSSSSS SSSSSSSSSS
SSSTGGGNAG VDAELGYSIG DVYAPSFDYT AVGGERKTDN YRVIGYYMPS LDGSFPPSAI
GEQQAQMLTH INYAFIGINS QLECDFIDVE KADAETQIIA ELQALKNWNA DLKILFSVGG
WAESNDAAET VSRYRDAFAP ANREHFVSSC VAFMQQHGFD GIDIDWEYPR AEDVDNFIAG
LAAMRNQLDA RGNGELVTIA GAGGAFFLSR YYSKLAAIVE QLDFINLMTY DLNGPWNGVT
KTNFHAHLYG NNQEPRFYNA LREADLGLTW EEIVERFPSP FELTVDAAIK QHLMMDIPRE
KIVMGVPFYG RAFFNTGSSN TGLYQTFNTP NGDPYVGDAS LLVGCEACEA RGEPRIATFN
DIQQLIEGNY GYTRHFDDQT KAPWLYHAEN NIFVTYDDAQ SLVYKTDYIK QQGLGGAMFW
HLGQDDSQFT LLATLHTELN GANAGSLQGG NSETDNTTDE TEGNNEDNTE QNPEENTDTE
ETETETETET ETETETETET SVEQPTAPTI AWMNTSYTGS SVTVTITWNM YWGTNGNQWQ
LWLDGEQVYS ANLTTNGQNA QTDSKIITIT GAGAHSVEVK LCNQQDINVS CASDSETITL
QGGSDGATSS SSSSTSSSSS SSSSSTGGST SSTSSSSSST SSSSSSSSSS SSSTSGGGET
DLSGVVYGEY NNTYKQTSDK IIVTYFVEWG IYGRDYHVNN IPASNLTHVL FGFIAMCGDN
PHASGGAQAA IASECADKQD FEVTLVDRFA NLEKTYPGDT WYDDTTGQDY NGNFGQLRKL
KAQHPHLKIL PSIGGWTMST PFYEMAKNEA NRAVFVESAV NFIKKYDFFD GVDIDWEYPV
YGGTAPELST AADRDAYTAL MRDLRAALDE LAEETGREYE ITSAVGAAPE KIAAVDYASA
TTYMDYIFLM SYDYMGAWAN TTGHHTPLYN NNEEREGFNT HASVQNLLTA GVPSSKLVVG
GAFYGRGWVG TQNTNAAKSD LFPLYGQASG AAKGTWEAGV QDYRDLYDNY IGTNGTGING
FSAHYDEIAE AAYLWNSSTG EFISYDSPRS IAAKADYVKQ YNLAGMLTWE IDGDNGQLLN
AINESFGNEK Q
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