Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3870 |
Symbol | |
ID | 3967037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4875936 |
End bp | 4879751 |
Gene Length | 3816 bp |
Protein Length | 1271 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637922967 |
Product | glycosyl hydrolase family chitinase |
Protein accession | YP_529337 |
Protein GI | 90023510 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3325] Chitinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.762403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.150806 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTTAA CTAAATTTGC AGTGGCTGCA CTTAGTGTTG CCGTACTTTC TGCATGTGGC GGAGGCGCCG GTAACAGCCC TAGCCCCGGT GCAGGTTCCA ATACAAATAC TGAGTCGGCA TCTAGCAGCT CCAGTTCCAG CTCTAGTTCT AGCACAAGTT CAACATCCAG TTCTTCTTCC AGCTCTAGTG GTTCAGCAGA AGTAAATGTA GATATTGACG TTGATATCGA TGTGGAAAAC GGCTCTAGTT CGAGCAGCTC ATCAGGCTCT AGCTCGTCTA GCACGGGCGG TGGCGATATT ACTATTATTG ACGAAATAGA GAGCTCGACC AGTTCTTCTA CGTCTAGCTC AAGTTCCAGT GGCGCAACAA GTTCAAGCAG TACTTCTTCG TCTAGCAGTT CTTCAAGCAG CTCTAGTTCA TCTGGCGCTA CCGGCTCGTC ATCTAGCAGC TCTGGTGCGG GTAGTACTAG TTCATCATCA AGCTCTAGTA GCTCAAGTTC GTCTTCTAGT TCATCGTCAA GTTCTTCAAG CTCTTCTAGT TCATCAAGCA CGGGCGGTGG CAATGCGGGT GTAGATGCCG AATTGGGTTA CAGCATTGGC GACGTCTATG CGCCAAGCTT TGATTACACC GCAGTAGGCG GCGAGCGCAA AACAGATAAC TACCGCGTTA TTGGCTATTA CATGCCAAGT TTAGATGGTT CGTTTCCGCC TAGCGCAATT GGTGAGCAAC AAGCGCAAAT GCTTACCCAT ATTAACTATG CATTTATTGG TATTAACAGC CAGCTAGAGT GCGATTTTAT AGATGTAGAA AAAGCCGACG CAGAAACTCA AATTATTGCT GAGTTACAAG CACTAAAAAA TTGGAATGCC GATTTAAAAA TCCTTTTTTC TGTAGGGGGT TGGGCAGAAT CTAACGACGC AGCCGAAACC GTTAGCCGCT ACCGCGATGC GTTTGCACCG GCAAACCGCG AGCATTTTGT TAGCTCGTGT GTAGCCTTTA TGCAACAACA CGGCTTTGAT GGCATAGATA TAGATTGGGA ATACCCTCGC GCCGAAGATG TAGATAACTT TATTGCCGGC CTAGCAGCAA TGCGCAACCA ATTGGATGCA CGCGGCAACG GCGAGCTAGT TACCATTGCT GGCGCAGGCG GTGCGTTCTT TTTAAGCCGT TATTACAGCA AGCTAGCTGC CATAGTAGAA CAGTTAGACT TTATAAATTT AATGACCTAC GACCTAAACG GACCGTGGAA CGGCGTAACA AAAACTAACT TTCACGCACA CCTGTACGGC AACAACCAAG AGCCGCGCTT TTACAACGCG CTGCGCGAAG CAGACCTTGG TTTAACGTGG GAAGAAATAG TAGAGCGTTT TCCTAGCCCG TTCGAGCTCA CCGTAGATGC CGCCATTAAA CAACATTTAA TGATGGATAT TCCGCGCGAA AAAATTGTAA TGGGCGTACC TTTTTACGGT CGTGCATTTT TTAACACAGG TTCATCAAAC ACCGGTTTAT ACCAAACCTT TAACACCCCA AATGGTGACC CCTATGTAGG TGACGCTAGC TTATTGGTTG GTTGTGAAGC CTGCGAAGCG CGCGGCGAGC CACGCATTGC TACCTTTAAC GATATTCAAC AACTTATAGA AGGTAACTAC GGCTATACCC GTCACTTTGA TGATCAAACC AAAGCGCCTT GGTTGTATCA CGCAGAAAAT AATATATTTG TAACCTACGA CGATGCTCAA TCGTTGGTGT ATAAAACCGA TTATATTAAA CAACAAGGTT TAGGCGGTGC GATGTTTTGG CACCTAGGCC AAGATGATTC GCAATTTACT TTATTGGCTA CTTTACACAC CGAGCTAAAC GGCGCAAACG CTGGTAGCCT GCAAGGTGGC AATAGCGAAA CCGACAACAC AACGGACGAA ACAGAAGGCA ATAACGAAGA CAACACCGAA CAAAACCCAG AAGAAAATAC CGATACTGAA GAAACAGAAA CAGAAACAGA AACAGAAACA GAAACAGAAA CAGAAACAGA AACAGAAACA AGCGTAGAGC AACCCACTGC GCCAACAATA GCTTGGATGA ACACAAGCTA TACCGGCAGC AGTGTAACGG TCACTATTAC GTGGAATATG TACTGGGGTA CAAACGGCAA CCAATGGCAG CTATGGTTAG ATGGCGAGCA AGTGTATTCA GCCAACTTAA CTACCAATGG CCAAAATGCA CAAACCGACA GCAAAATCAT TACTATTACT GGCGCAGGTG CTCATAGCGT TGAAGTTAAA CTGTGTAACC AGCAAGATAT AAATGTTAGC TGTGCTAGCG ATAGCGAAAC TATCACTTTG CAAGGCGGTA GTGATGGCGC AACGTCTAGT TCTTCTTCCA GCACGTCGTC AAGCTCTAGT AGCTCGTCTT CTAGTACTGG TGGTTCAACG TCGAGCACAA GCAGCTCCTC TAGTTCTACT AGTTCATCGA GCAGTTCATC TAGCTCTAGT AGTTCAAGTA CATCGGGTGG CGGCGAAACA GATTTATCTG GCGTGGTTTA CGGCGAGTAC AACAACACTT ACAAACAGAC GAGCGATAAA ATAATTGTTA CTTACTTTGT AGAGTGGGGC ATTTATGGCC GCGACTATCA CGTAAATAAT ATTCCGGCGT CTAACCTTAC GCACGTACTG TTTGGCTTTA TTGCAATGTG TGGCGATAAC CCACACGCCT CAGGCGGCGC GCAAGCGGCT ATTGCTAGCG AGTGTGCAGA TAAGCAAGAT TTTGAAGTTA CCTTGGTAGA TCGTTTCGCC AACCTAGAAA AAACTTACCC AGGCGATACG TGGTACGACG ATACAACCGG TCAAGATTAC AATGGTAACT TTGGGCAACT ACGCAAACTA AAAGCACAGC ACCCGCATTT AAAAATATTG CCATCTATTG GCGGCTGGAC AATGTCTACC CCATTTTATG AAATGGCAAA AAATGAAGCT AACCGCGCAG TGTTTGTTGA ATCTGCCGTT AACTTTATTA AAAAATATGA CTTCTTCGAC GGAGTAGATA TAGATTGGGA ATACCCTGTA TACGGCGGTA CAGCCCCAGA ATTATCTACC GCTGCCGACC GCGATGCCTA TACCGCCTTA ATGCGTGACC TACGCGCAGC ATTAGACGAG CTGGCAGAAG AAACGGGTCG CGAATACGAA ATTACTTCGG CCGTAGGTGC AGCACCAGAA AAAATTGCAG CAGTAGATTA CGCCAGTGCC ACAACGTATA TGGATTACAT ATTCCTAATG AGCTACGACT ACATGGGCGC ATGGGCGAAC ACAACGGGTC ACCACACCCC GCTGTACAAC AACAACGAAG AGCGAGAAGG TTTTAACACA CATGCGTCTG TGCAAAACCT ATTAACCGCA GGTGTGCCTT CATCCAAATT AGTCGTGGGT GGTGCATTCT ACGGCCGCGG CTGGGTAGGC ACCCAAAATA CCAACGCTGC CAAAAGCGAT TTATTCCCGC TATATGGCCA AGCTTCTGGC GCGGCAAAAG GCACCTGGGA AGCAGGGGTA CAAGACTACC GCGACCTGTA CGACAACTAT ATTGGCACCA ATGGCACAGG CATTAATGGC TTTAGCGCAC ACTACGACGA AATAGCCGAA GCCGCCTACC TTTGGAACAG CAGCACCGGC GAATTTATAA GCTACGATTC GCCGCGCTCT ATTGCAGCAA AAGCCGATTA CGTAAAACAA TACAATCTAG CTGGCATGCT AACCTGGGAA ATAGACGGCG ATAACGGCCA ACTACTCAAC GCCATTAACG AAAGTTTCGG CAACGAAAAG CAGTAG
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Protein sequence | MNLTKFAVAA LSVAVLSACG GGAGNSPSPG AGSNTNTESA SSSSSSSSSS STSSTSSSSS SSSGSAEVNV DIDVDIDVEN GSSSSSSSGS SSSSTGGGDI TIIDEIESST SSSTSSSSSS GATSSSSTSS SSSSSSSSSS SGATGSSSSS SGAGSTSSSS SSSSSSSSSS SSSSSSSSSS SSSTGGGNAG VDAELGYSIG DVYAPSFDYT AVGGERKTDN YRVIGYYMPS LDGSFPPSAI GEQQAQMLTH INYAFIGINS QLECDFIDVE KADAETQIIA ELQALKNWNA DLKILFSVGG WAESNDAAET VSRYRDAFAP ANREHFVSSC VAFMQQHGFD GIDIDWEYPR AEDVDNFIAG LAAMRNQLDA RGNGELVTIA GAGGAFFLSR YYSKLAAIVE QLDFINLMTY DLNGPWNGVT KTNFHAHLYG NNQEPRFYNA LREADLGLTW EEIVERFPSP FELTVDAAIK QHLMMDIPRE KIVMGVPFYG RAFFNTGSSN TGLYQTFNTP NGDPYVGDAS LLVGCEACEA RGEPRIATFN DIQQLIEGNY GYTRHFDDQT KAPWLYHAEN NIFVTYDDAQ SLVYKTDYIK QQGLGGAMFW HLGQDDSQFT LLATLHTELN GANAGSLQGG NSETDNTTDE TEGNNEDNTE QNPEENTDTE ETETETETET ETETETETET SVEQPTAPTI AWMNTSYTGS SVTVTITWNM YWGTNGNQWQ LWLDGEQVYS ANLTTNGQNA QTDSKIITIT GAGAHSVEVK LCNQQDINVS CASDSETITL QGGSDGATSS SSSSTSSSSS SSSSSTGGST SSTSSSSSST SSSSSSSSSS SSSTSGGGET DLSGVVYGEY NNTYKQTSDK IIVTYFVEWG IYGRDYHVNN IPASNLTHVL FGFIAMCGDN PHASGGAQAA IASECADKQD FEVTLVDRFA NLEKTYPGDT WYDDTTGQDY NGNFGQLRKL KAQHPHLKIL PSIGGWTMST PFYEMAKNEA NRAVFVESAV NFIKKYDFFD GVDIDWEYPV YGGTAPELST AADRDAYTAL MRDLRAALDE LAEETGREYE ITSAVGAAPE KIAAVDYASA TTYMDYIFLM SYDYMGAWAN TTGHHTPLYN NNEEREGFNT HASVQNLLTA GVPSSKLVVG GAFYGRGWVG TQNTNAAKSD LFPLYGQASG AAKGTWEAGV QDYRDLYDNY IGTNGTGING FSAHYDEIAE AAYLWNSSTG EFISYDSPRS IAAKADYVKQ YNLAGMLTWE IDGDNGQLLN AINESFGNEK Q
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