| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3714 |
|---|
| Symbol | |
|---|
| ID | 3966730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4701025 |
|---|
| End bp | 4701774 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922811 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_529181 |
|---|
| Protein GI | 90023354 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCA AACACGCCCG TCTTGACCGG TTTATAAGCC TTAACAGCAA CCTTAATCGT
CGCGATGTGC GCCTTGCAAT TGCCCAAAAG CGCATTCTTG TAAACGGTAA ACACGCCAGC
ACTATTCATC AGGTGGTGAG CCAGTTTTGC CATATCACCT TCGACAACCA AACCCTGCAA
GCCAACGCAC CGGTTTACAT TATGCTAAAC AAACCGGCAG GTAGAGTAAG TGCCACCAAA
GATTCCACCC ACCCCACTGT TGTGGGCTGC CTGCCGCAAC AATTGCAAGC AAACATCCAT
ATAGTTGGCA GGTTAGATTT TAACTCGACG GGGTTAATGC TACTTACCAA CAACGGCGCT
TGGTCTCGCC ACTTAACCAG CCCAGAAAAC AAAGTAAATA AAATCTACGA AGTGGAATTA
GAACGAACAA TAAACGATGA TGAGTGGCCA CAGTATATAA GTGCATTTGC AAGCGGCATG
TATTTCGCGT TTGAAGACCT CACAACGCAA CCAGCAAAAT TAGAAAGGCT AACCGCCACC
CGTGCGCGTG TGACTTTAGT AGAGGGCCGC TACCACCAAA TAAAGCGCAT GTTCGGCCGC
TTTCGCAATA AGGTAATTGC ATTACACCGC ACTCAACTAG GCGCACTCCC TCTCGACCCA
GCACTGCAAC CGGGCGAGCA CCGGCTACTT AACGACGATG AAATTATAAA ATTGAGCAAC
GCAACGTTTA CGAATGCAGA TTTAAAATAA
|
|---|
| Protein sequence | MTSKHARLDR FISLNSNLNR RDVRLAIAQK RILVNGKHAS TIHQVVSQFC HITFDNQTLQ
ANAPVYIMLN KPAGRVSATK DSTHPTVVGC LPQQLQANIH IVGRLDFNST GLMLLTNNGA
WSRHLTSPEN KVNKIYEVEL ERTINDDEWP QYISAFASGM YFAFEDLTTQ PAKLERLTAT
RARVTLVEGR YHQIKRMFGR FRNKVIALHR TQLGALPLDP ALQPGEHRLL NDDEIIKLSN
ATFTNADLK
|
|---|
| |