| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3656 |
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| Symbol | rho |
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| ID | 3966613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4636973 |
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| End bp | 4638232 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922753 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_529123 |
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| Protein GI | 90023296 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.04416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.624434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTTA CCGACTTAAA ATCAAAACCC ATTGAAGAAC TTATCGATCT TGCAAAAGAA
ATGGGCATGG AGAGCCTAGC GCGCTCCCGC AAACAAGACG TCATCTTCAA CATTCTTAAA
CGCCACGCCC GCAGCGGTGA AGATATCTAC GGCGACGGTG TATTAGAAAT ACTGCAAGAT
GGCTTCGGCT TTTTGCGCTC TGCAGGCGCT TCTTACCTAG CTGGCCCAGA CGATATTTAC
GTTTCCCCCA GCCAAATTCG CCGCTTTAAC TTGCGCACCG GCGATACCAT AGCGGGGAAA
ATTCGCCCCC CTAAAGAAGG CGAACGTTAT TTTGCCCTTC TTAAAGTAAA CGAAATTAAT
TTCGACAAGC CAGAAAACTC CCGCAACAAA ATTCTCTTCG AAAACCTTAC TCCGCTATTC
CCTCAGGAAC GCCTCGAGTT AGAAACCGGT AACGGCTCTA CCGAAGACTT AACCGGCCGC
ATCATCGACC TAGTAAGCCC CATTGGTAAA GGTCAGCGCG GTTTGATTGT TGCACCACCT
AAAGCTGGTA AAACCATCAT GATGCAGAAT ATTGCGCAGG CTATTACGCG CAATAACCCT
GAGTGCCATT TAATTGTTTT ACTTATCGAC GAACGCCCAG AAGAAGTAAC CGAAATGCAG
CGCTCTGTGC GCGGCGAGGT GGTTGCCTCT ACCTTCGACG AACCACCTTC GCGCCACGTA
CAAGTAGCCG AAATGGTTAT TGAACGTGCT AAGCGTTTAG TTGAGCATAA AAAAGATGTA
ATTATTCTGC TCGACTCCAT CACTCGTTTG GCGCGCGCTT ACAACACCGT TATTCCTTCA
TCAGGTAAAG TACTTACCGG TGGTGTTGAT GCCCACGCAC TAGAGCGCCC AAAGCGTTTC
TTCGGTGCTG CGCGTAACAT TGAAGAAGGC GGCAGCTTAT CTATTGTGGC TACCGCACTT
ATCGATACCG GCTCTAAAAT GGATGAAGTT ATCTACGAAG AGTTTAAAGG TACCGGTAAC
ATGGAACTGC ACCTCGACCG CAAAATTGCC GAGCGTCGCG TTTACCCTGC CATTAACATC
CGTCGCTCCG GCACCCGTCG CGAAGACCTG TTAATGAAAG AAGAGGAACT ATCTCGCGTA
TGGATTCTGC GCAAACTCCT CCACGATATG GAAGACGTAG CCGCCACAGA ATTCCTTTCC
GACAAGCTAA AAGACTTCAA AACTAACAAC GAGTTTTTCT TGTCTATGCG CTCGAAGTAA
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| Protein sequence | MNLTDLKSKP IEELIDLAKE MGMESLARSR KQDVIFNILK RHARSGEDIY GDGVLEILQD
GFGFLRSAGA SYLAGPDDIY VSPSQIRRFN LRTGDTIAGK IRPPKEGERY FALLKVNEIN
FDKPENSRNK ILFENLTPLF PQERLELETG NGSTEDLTGR IIDLVSPIGK GQRGLIVAPP
KAGKTIMMQN IAQAITRNNP ECHLIVLLID ERPEEVTEMQ RSVRGEVVAS TFDEPPSRHV
QVAEMVIERA KRLVEHKKDV IILLDSITRL ARAYNTVIPS SGKVLTGGVD AHALERPKRF
FGAARNIEEG GSLSIVATAL IDTGSKMDEV IYEEFKGTGN MELHLDRKIA ERRVYPAINI
RRSGTRREDL LMKEEELSRV WILRKLLHDM EDVAATEFLS DKLKDFKTNN EFFLSMRSK
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