| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3649 |
|---|
| Symbol | |
|---|
| ID | 3966606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4625044 |
|---|
| End bp | 4626414 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637922746 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_529116 |
|---|
| Protein GI | 90023289 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTT ATAGCCGCCA TCGCCATAAC ATTCAGCTCG CTGCTGTGTT ACTTACAGTG
CTGGCTGCGG TAAGCCATCG CTGGTTACCT CTTAAAACTT ACGAAATAAC GGGTAGCAAG
GGACATACCC AACTTAACCT TTACTCGGGC AAGGGGTACG AGTACGGCGA AGAAGCCGAC
TGGGTAGACA AAGATGCAAT GAAAATGCGC TGCACAATCA CACCCGCATC AGAAAAAACT
GCCTGCGGTT TAGATATTGC TTTTTATGAA TGGCCAAAAT GGGAAAATGG CATTAATTTG
CACAACTACG ATACCGTACA CTTAGATATC GACTACCAAG GCTCAGCCAG TAAAATTCGC
TTCTACGCGC GAAACTTTCA CCCAGATTAT TCTAACGTAG GTGACTTTAA CAGCACCAAG
TACAACACCA TAAACCTGCG CACTCGCGAT TTAACCCAAC CGGTAGACGT GCCACTTAGT
GCACTGGTAG TGGCTGATTG GTGGCTAGAT CAATTCGATA TTCCTCTCGC ACAATCCCAC
TTAGACTTCT CTAATATAAC CGGCATGGGG TTTGATTTCG GCTCGCCAAT ACCCTACGGC
GAGCACACTA TTCACTTTAA AAAAATAGTG TTTAAGGGGC ATTATATTTC TAGCGCAAGC
TGGTATTTAA TAATAATGAG CATTTGGATG CTCACTATTG TCGTCAAAAC TGTGCGCAGA
TTGATTTATT TACGTGAAAA AAATAGGCGC TATTTACAAC GCGTAAGCAT GCTCGAGGCA
GATAAAAACC AACTGCAAAA CAAGGCCGCT AAATTCGAAG AACTGTCTAC TACAGATTCA
CTCACGGGCG CCTACAATCG GTTTGGCATA GACCGCATTA TTACCAACTT ATTCGAACAG
CGAGCTTTAA TGCTACCGCT CACCATTATC ATTGCAGATA TCGATCACTT TAAGCGTATA
AACGATACCG AAGGCCATGC CGTTGGCGAT AAGGTACTTA GCAAACTTGG CCGCACAATA
TTAGCAAACA TTCGCGAAAA CGATTTTCTG GGGCGTTGGG GTGGCGAGGA ATTTATAATA
ATTTGCACGC ATACCGACGC GCAGCATGGT TTTTTACTGG CAGAAAAATT GCGGCTTTTA
ATTGAGGGCA CACAATTCGA ATTAGAAAAT TCGACAAATA GCCCGCGACT AAACCAGCAA
CTACATCCAC AACTACATCC GCAACTAAAA GTTACCGCCA GTTTTGGTGT GGGTGAAGTA
CAGGCAGGAG AAACCTTTAC AGAAACGTTT AACCGAGCAG ATAGCGCGCT TTACGAGGCT
AAAAAGCAGG GGCGAAATTG TACTGTACTC GCCCAGCACA CTAACGTTTA G
|
|---|
| Protein sequence | MSFYSRHRHN IQLAAVLLTV LAAVSHRWLP LKTYEITGSK GHTQLNLYSG KGYEYGEEAD
WVDKDAMKMR CTITPASEKT ACGLDIAFYE WPKWENGINL HNYDTVHLDI DYQGSASKIR
FYARNFHPDY SNVGDFNSTK YNTINLRTRD LTQPVDVPLS ALVVADWWLD QFDIPLAQSH
LDFSNITGMG FDFGSPIPYG EHTIHFKKIV FKGHYISSAS WYLIIMSIWM LTIVVKTVRR
LIYLREKNRR YLQRVSMLEA DKNQLQNKAA KFEELSTTDS LTGAYNRFGI DRIITNLFEQ
RALMLPLTII IADIDHFKRI NDTEGHAVGD KVLSKLGRTI LANIRENDFL GRWGGEEFII
ICTHTDAQHG FLLAEKLRLL IEGTQFELEN STNSPRLNQQ LHPQLHPQLK VTASFGVGEV
QAGETFTETF NRADSALYEA KKQGRNCTVL AQHTNV
|
|---|
| |