| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3639 |
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| Symbol | |
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| ID | 3966596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4616127 |
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| End bp | 4617269 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637922736 |
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| Product | orotate phosphoribosyl transferase |
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| Protein accession | YP_529106 |
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| Protein GI | 90023279 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.472544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAG ATAGACTGCT GAGTTTAATG GTAGATAAAC AGGCTTCGGA TCTGTTTATT
ACGGCTGGGG TGGCGCCTTC CATTAAGCTG CACGGTAAAA TTGTTCCGGT AAGTACCACG
CCGCTTTCGC CAGAAAAGTC GCGCGAGCTG GTACTTAGTG TAATGAATGA AAAACAGCGC
AAAGAGTTCT TAGAAGCCAA AGAGCTTAAC TTTGCGGTAA GTGCGCGCGG TGTGGGTCGA
TTCCGTGCCA GCGCCTTTTA CCAGCGTAAC CTGGCGGGTA TGGTGTTGCG TCGTATTGAA
ACCAATATTC CGCAAATTGA TGAGTTGGGC CTACCCGAAA TAATCAAAGA GCTGGCGATG
ATTAAGCGCG GCTTGGTGAT GTTTGTGGGG GCAACCGGTA CCGGTAAATC CACCTCGTTA
GCCGCGATGA TTGGCCACCG CAATCGCAAC TCCAAGGGCC ATATTATTTC GATAGAAGAC
CCGATTGAAT TTATCCACCA GCATCAGGGA TGTATTGTTA CCCAGCGCGA AGTGGGTATC
GATACCGATT CTTTCGAGGT AGCGTTAAAA AATACCCTGC GGCAGGCACC CGATGTTATT
CTGATTGGTG AGGTTCGCTC GCGCGAAACC ATGGACCACG CAATCGCCTT CGCCGAAACG
GGTCACCTGT GTTTATGTAC GTTGCACGCT AACAACGCTA ACCAAGCGTT GGATCGTATT
ATTCACTTCT TCCCCGCCGA TCGTCACCGC CAGTTGTGGA TGGACCTGTC GCTCAACCTA
AAAGGTATTG TGGCGCAGCA GCTTATTCCA ACACCCGATG GGCAAGGGCG CAGGGCGTGT
TTGGAAGTGT TTTTGAATAC CCCTCTCGCT GCAGATTTAG TGCGCAAGGG CGAAGTGCAC
GAGCTAAAAG AGTTGATGAA GCGCTCCACC GAGCAGGGCA TGCAAACCTT CGATCAGGCG
CTATACGAGC TTTACGATTC GGGCGAAATT ACCTACGAAG ATGCGCTATC TCACGCGGAT
TCGCCCAACG ACCTGCGCTT GATGATCAAG CTGGGTTCGG AAAGCGATGC CGATTACCTC
TCCAACGCTG CGGATGAGTT AAGTATCCAA GAGGATGAAA GCAACCGCTC GCGCCGTTTC
TAA
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| Protein sequence | MELDRLLSLM VDKQASDLFI TAGVAPSIKL HGKIVPVSTT PLSPEKSREL VLSVMNEKQR
KEFLEAKELN FAVSARGVGR FRASAFYQRN LAGMVLRRIE TNIPQIDELG LPEIIKELAM
IKRGLVMFVG ATGTGKSTSL AAMIGHRNRN SKGHIISIED PIEFIHQHQG CIVTQREVGI
DTDSFEVALK NTLRQAPDVI LIGEVRSRET MDHAIAFAET GHLCLCTLHA NNANQALDRI
IHFFPADRHR QLWMDLSLNL KGIVAQQLIP TPDGQGRRAC LEVFLNTPLA ADLVRKGEVH
ELKELMKRST EQGMQTFDQA LYELYDSGEI TYEDALSHAD SPNDLRLMIK LGSESDADYL
SNAADELSIQ EDESNRSRRF
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