| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3612 |
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| Symbol | |
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| ID | 3966569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4579873 |
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| End bp | 4583433 |
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| Gene Length | 3561 bp |
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| Protein Length | 1186 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922709 |
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| Product | methionine biosynthesis MetW |
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| Protein accession | YP_529079 |
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| Protein GI | 90023252 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase
[COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0161329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00479901 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGCGAA GCACCCAATC AACACCCATT GTTAAGCGAA AGATTTCTGC CTATGTAGGT
TGGGGTCTGT GCGTGTTACT TAGCGTCTGC ACGGCCTCGA TCTCTTGGGC AGGTAACCCT
ATTGTGTCTC ATGTATATAC CGCAGACCCT GCTGCACGGG TAATAAACGG AAGAGCCTAT
GTAATGGTTA CCCACGATCA GGATAACCAA AATGATTACG GTGGTTTGAT TGATTACTAC
CTGTTCTCAT CGGACGATAT GGTTAATTGG CAAGATCACG GTATTGTGTG GAATTCTCGA
ACAGACAGTA GTTGGGCCAG TCTTGCTTAC GCCCCAGATT TTATCGAGCG CAATGGAAAG
TACTACCTGT ACTTTCCCAA CGGCGCAAAC TCTATTGGTG TCGCTGTGGC CGATAGCCCT
GAGGGCCCCT ATACTGATCC ACTCGGTAGG CCGCTGGTTG ACCGCAATAC CCCCAATGCC
AATGTTGACT GGCTGTTCGA TCCCGGTGTA TTTATTGATG ACGACGGACA AGCCTTTTTG
TACTTTGGTG GAGGCGCTGA TGGAACCGCG CGCGTTATTC GTTTAAATAA CGACATGATA
AGTACCAGTG GTGCAGCCAT AAGTATTGAC GTACCTAACT TCTTTGAAGC GCTATACATG
CATAAGCGCA ACGGCATTTA CTACTTATCC TACTCGACCA ACCCCAGCGC GGGGATGAGC
ATAGATTACA TGACGAGTAA TAACCCTACC TCAGGGTTCA CCCATCGCGG CACCATTTTG
CCCAACCCTT GGGAAAATAA TTCCAATAAC AACCACCAGT CAATTATTGA ATTTAATAAC
GAATGGTACA TTTTTTACCA CAATAGAGCT GTCGCAAATA CGCGGGGCGA TAGTACCTTT
TCCCGCTCTA TTAACGTGGA TCGTCTTTAC TACAATTCCG ACGGCAGTAT TCGAGAAGTA
AATGCCAGTT CAATAGGTGT ACCCGCGGTA CGTAATGTTA ATGCTTTTTC CATAAACCAA
GCAGAAACAT TCGATCAAGA AGGTGGCATA GAAACTGAGC CGTCTTCTGA AGGTACCTTG
AATATTCAGA TGGGCCCAGG AGATTGGGTA AAAGTTGCTA ACGTCGATTT TGGTAACGGC
GCCACACAAT TTAACGCTCG AGTTGCTAGC GCAATCGATA ATTCAAAGCT GGAAATTATT
TTAGGCAGTC TCAGTAATAC CCCGCATGCC TCGCTCGAAA TTACCAACAC AGGCGGGTGG
CAAAATTGGC AAACACAAAG CACAAGTTTT AATGCAATAA CTGGTGTTCA CGATGTATAC
CTGCGCGGTA CTTCTGGGCA CAACCTAAAT TGGTTTGAAT TTGAAGGCGA AAATAATGGA
GGAAGCAGTC AGCTAACGGT TGAGTTGGAA GACTTGGCTT CGCAATCTCT TTTTGCTCCC
CTTAGCGTAC GCTCCGATAA CATGGCTAAT AACGGCGCTT ACATTGAATG GAGTAATGAT
GGGAGCAATC AGATTCTCAG TGTGGCCAGC GAGCAATCGC AAGGCCAAAT CAGTGTCCCA
TTTACTCTAT CGCAAGCTTC CGATGTCGAA TTTAACGTAC GCGTGAATCT TGCTAATGGC
AATGATGATT CGTTTTATTA CAAGCTAAAC AGTAATAGCT GGCAGACTTT TAATAATCAA
GCTACCACTG GTTGGCAGGT GCTCACGCCC AACACCTTCA CTGGTCTTAG CCCTGGGAAT
CACATTCTTA CTCTACTTCG GCGTGAAGAT GGCGCCAAAT TAGATACCCT CACGTTGGTA
GCCTCCGCGG GCAGTATTCA AACCAATAAC AGCTCATCAA GTTCTACCTC CAGCAGTAGT
TCAACGACTA GCTCAAGTTC AACCAGCTCG AGTAGTTCCT CTGGCGCCGC GCCAACTGGT
AACGTTACTT ACTCTATAAA TGTTACTAAC GACTGGCAAA GTGGTTATTG TGCGGAGCTT
ACCGTTACCA ATAACACGAA CAACGCTCTG CAGTGGCAAG CTAGTGTTTC TATGAGCGAT
AGTGTCGACA GTATGTGGAA TGCTAGCTGG TCGCAGAGCG GGAACATACT TAACGTAAGC
GGGGTAGAGT GGAATAATAC GTTGCAAGCA GGGCAAAGCC AGAGTGGCAT AGGATTTTGT
GCTACACGTG CCAGCTCGTC TTCCTCCAGC TCTACAACAA GTTCTACTTC CGGTTCCACA
TCAAGCTCTA GTTCATCGGG AGGCTATACC GTTCCGAGTA ATAATTTCGC AGTCAATGGT
GGTGTAGAAA ACAACCTGCA GAGCTGGGGC GCAACGGCGG GTTCAGTAAC ACGTTCTACT
GAACAACGTT ATAGCGGAAA CGCAAGCGCG CGTATAACAA ATCGAGCAGA AAACTGGCAC
GGTTTGACGT TCAGTGTTGG TGAGCTTACG CAAGGCAACC TGTACGAAGT TGCGGTGTGG
GTAAAACTTG CGGCAGGCAG TGCGGACACA CCTATTACGC TTACCGCCAA ACGACAAAAT
GATAGCGACG ATTCCACTTA TAACGAATAT ACCGGCATAG TCACGACCAT TGCTAACGAT
TCTGAATGGG TGCTGCTGCA CGGGCAATAC ACTCAAACTG GCACAGCGTT TGAGCATTTT
ATTATCGAGT CAGAAAGCGA TAGCGTAAGT TTTTATGCCG ATGAGTTTTC TATTGGTGGA
GAGGTCACGC CCAAAAACGA AGTGGGATTT TTTGTGGGTA ACATTACCAC TAATGGCAAT
GTGCGCAATG ATTTTACTCA GTACTGGGAT CAACTAACAC CAGAAAATGA AGGAAAGTGG
GGTTCGGTAG AACGCACTCG TGATGTGTAT GATTGGAGTG GACTAGACAG AGCCTATAAC
TACGCCAAAC AAAATAATAT TCCGTTTAAA CAGCATACTA TGGTGTGGGG TAGCCAACAG
CCCAACTGGA TTGATTCGCT CAGCCCAGCA GAACAGGCTG CAGAGATAGA GGAGTGGATA
AGAGATTATT GTGCGCGCTA TCCTGATACT GAAATGATTG ATGTGGTAAA CGAAGCAACG
CTGGGCCATG CTCCTGCTAA CTACGCGGCG AGTGCGTTTG GCAATAATTG GATCATTCGT
TCGTTCGAGC TTACTCGTCA ATATTGTCCT AACAGCATTT TAATATTGAA CGATTACAAT
GTTTTAAGTT GGAACACTCA AGAGTTTATC CAGATGGCTA CTCCGGCTGT CAATGCAGGC
GTTGTAGATG CAATTGGATT ACAAGCACAC GGCTTAGCGG ATTGGTCTTT AAGTGATTTA
GAAACCAAAC TAAACCAGGT TGCGGCATTG GGTTTACCCA TTTATATATC CGAATACGAT
ATAGAAAAAA CTAACGACCA AGAACAGCTG CGCGTAATGC AAACTCAGTT CCCGCTGTTT
TATAACCATC CATCGGTGAA AGGCATTACT ATTTGGGGGT ATGTTGTTGG GGCTACTTGG
CGCGATGGGA CGGGATTGTT GCACAGTAAC GGAACACCCA GACCGGCACT TACTTGGTTA
ATGGATTACT TGAATAGATA G
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| Protein sequence | MLRSTQSTPI VKRKISAYVG WGLCVLLSVC TASISWAGNP IVSHVYTADP AARVINGRAY
VMVTHDQDNQ NDYGGLIDYY LFSSDDMVNW QDHGIVWNSR TDSSWASLAY APDFIERNGK
YYLYFPNGAN SIGVAVADSP EGPYTDPLGR PLVDRNTPNA NVDWLFDPGV FIDDDGQAFL
YFGGGADGTA RVIRLNNDMI STSGAAISID VPNFFEALYM HKRNGIYYLS YSTNPSAGMS
IDYMTSNNPT SGFTHRGTIL PNPWENNSNN NHQSIIEFNN EWYIFYHNRA VANTRGDSTF
SRSINVDRLY YNSDGSIREV NASSIGVPAV RNVNAFSINQ AETFDQEGGI ETEPSSEGTL
NIQMGPGDWV KVANVDFGNG ATQFNARVAS AIDNSKLEII LGSLSNTPHA SLEITNTGGW
QNWQTQSTSF NAITGVHDVY LRGTSGHNLN WFEFEGENNG GSSQLTVELE DLASQSLFAP
LSVRSDNMAN NGAYIEWSND GSNQILSVAS EQSQGQISVP FTLSQASDVE FNVRVNLANG
NDDSFYYKLN SNSWQTFNNQ ATTGWQVLTP NTFTGLSPGN HILTLLRRED GAKLDTLTLV
ASAGSIQTNN SSSSSTSSSS STTSSSSTSS SSSSGAAPTG NVTYSINVTN DWQSGYCAEL
TVTNNTNNAL QWQASVSMSD SVDSMWNASW SQSGNILNVS GVEWNNTLQA GQSQSGIGFC
ATRASSSSSS STTSSTSGST SSSSSSGGYT VPSNNFAVNG GVENNLQSWG ATAGSVTRST
EQRYSGNASA RITNRAENWH GLTFSVGELT QGNLYEVAVW VKLAAGSADT PITLTAKRQN
DSDDSTYNEY TGIVTTIAND SEWVLLHGQY TQTGTAFEHF IIESESDSVS FYADEFSIGG
EVTPKNEVGF FVGNITTNGN VRNDFTQYWD QLTPENEGKW GSVERTRDVY DWSGLDRAYN
YAKQNNIPFK QHTMVWGSQQ PNWIDSLSPA EQAAEIEEWI RDYCARYPDT EMIDVVNEAT
LGHAPANYAA SAFGNNWIIR SFELTRQYCP NSILILNDYN VLSWNTQEFI QMATPAVNAG
VVDAIGLQAH GLADWSLSDL ETKLNQVAAL GLPIYISEYD IEKTNDQEQL RVMQTQFPLF
YNHPSVKGIT IWGYVVGATW RDGTGLLHSN GTPRPALTWL MDYLNR
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