Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3605 |
Symbol | |
ID | 3966562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4567796 |
End bp | 4570174 |
Gene Length | 2379 bp |
Protein Length | 792 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637922702 |
Product | glycosyl hydrolase family chitinase |
Protein accession | YP_529072 |
Protein GI | 90023245 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3325] Chitinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000852085 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0070526 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACCCTA TAGCTAAACT CACATTAGCC ACTGGCGCCA TGCTAAGTGC GCATGTGGCC TACGCTTACG ACTGCGATGG CCTTGCCACA TGGAACGCAT CGTCTGCCTA TGCCGGCTCT ACCGTTGTGC AACACAGTAA CGTGGCTTAC AAAGCCAACT GGTGGACACA AAACCAAAAC CCCGCTTCAC ATTCTGGCCC TTGGCAAGAG TGGACGAACC TAGGCAACTG CGATGGCGAC GGTGGCGGCA ACACCAACCA AGCGCCCAGC GCAAATGCCA ACGGCCCCTA CGCCGCGCAA CTTGGCGCCG CCATAGCGTT TAGCTCTGCA GGCTCTAGCG ATAGCGACGG CAATATTGCC AGCTACAACT GGACCTTTGG CGACGGTAAC AGCAGCAACC AAGCTAGCCC AAGCCACACC TATGGCAGCC AAGGCACCTA CGCGGTTACC TTAACCGTTA CCGATAACGA AGGCGCAAGC AGCAGTGCCA CCACAAGCGC AAGCGTTACC CAAGGCGGAG ACCCTGGCGA TTGCCAAGCA CCGCAATACA GTGCGGGCAC CCAATACGCT GCGGGCGATA TCGTTGCCAA TGGCGGCAAC CTGTACCAGT GTAATATTGC GGGCTGGTGC TCTTCATCTG CCGCATGGGC CTATGCCCCA GGTACTGGCG CACACTGGCA AGATGCGTGG TCACTTACGA GCGAATGCGA CGACAACGGC AACACCAACC AAGCACCTAC AGCCAATGCT AACGGCCCAT ATTCTGGTAG CGCTGGTATA AGCATTAGTT TTAGCAGCAA TGGCTCTGCC GACAGCGACG GCACAATTGC CAGTTACAGT TGGAACTTTG GCGACGGCGC AAGCAGCAGC CAAGCAAACC CAAGCCACAG CTACATGAAT GAAGGCACTT ACCAAGTTAG CCTAACCGTA ACCGATGACG ACGGCGCGAG CGCCACCGCA TTCACCACCG CTAACGTAAC TGGTAATGGC GAAAACCAAG AGCCTGTTGC AAGCATTAGT GCACCATCCA GCGCTAGCGA AGGCGCTAGT GTGAACTTTT CCAGCGCGGG CAGTAACGAC CCAGACGGCA GCATAGTTAG CTACAGCTGG AACTTTGGCG ATGGCACTAG CAGTCAACAA GCTAACCCCA GCCACACCTA CAGCAGCGCA GGTAGCTATA GCGTTAGCCT AACGGTTGTT GATAACGAAG GCGCGAATAA CGTCGCCAAC CACAGCATTA CAATCAGTGG CGATACCGGC GGCGGTACAC ACGGCGATAA AATTATTGGC TACTTCGCAG AGTGGGGCGT ATACGGCCGC AATTATCACG TTAAAAACAT TCACACCAGC GGCTCTGCCG ACAAACTCAC TCACATCGTT TACGCGTTTG GCAACGTTCA AAACGGCGAG TGTAAAATTG GCGATTCCTA CGCAGCATAC GACAAAGCCT ACAGCGCAGC AGACAGTGTA GATGGCGTTG CCGATACTTG GGACGACGGT GTACTGCGCG GTAACTTCGG TCAACTACGC CGCTTAAAAG CCATGCACCC ACAAATTAAA ATAGTGTGGT CTTTCGGTGG CTGGACATGG TCTGGCGGTT TTGGCGAAGC AGCAGCGAAT GCCGATCACT TTGCCAACTC CTGTTACGAC TTAGTATTCG ACGCACGCTG GGCAGACGTT TTCGACGGCA TCGACATCGA CTGGGAATAC CCCAACGACT GCGGCCTAAG CTGTGATAAT AGCGGCTACG ATGGCTACCG CGTACTCATG CAAGCATTGC GCAATCGTTT TGGCAACAAA CTAGTAACCG CTGCCATTGG CGCTGGCGAA TCTAAACAAA ATGCAGCCGA CTACGGTGGC GCAGCACAGT ACTTAGATTT TTACATGCTA ATGACCTACG ACTTCTTCGG CGCATTTAAC CCACAAGGGC CAACCGCACC GCACTCACCG CTATACAACT ACCCAGGCAT GCCAATAGAA GGATTCTCTT CTGACCACGG TATCCAAGTA CTTAAAAGCA AAGGTGTACC TGCCGAGAAA ATCTTACTGG GCATAGGCTT TTACGGCCGC GGCTGGACCA ACGTAACGCA AGATGCCCCA GGCGGCAGCG CTAACGGCGC AGCACCTGGC ACCTACGAAA AAGGCATTGA AGATTACAAA GTGTTGAAAA ACACCTGCCC AGCCACCGGC ACAATTGCCG GCACCGCTTA CGCCAAATGC GGAAGCAACT GGTGGGGCTA CGACACACCA GCCACCATCG ATAGCAAAAT GGACTACGCC AAACAACAAG GCCTAGGCGG CGCGTTCTTC TGGGAGCTAA GTGGCGACAC CACCGATGGC GAACTGATTA GAGCGATTGA TAATGGCTTA AAAAACTAA
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Protein sequence | MNPIAKLTLA TGAMLSAHVA YAYDCDGLAT WNASSAYAGS TVVQHSNVAY KANWWTQNQN PASHSGPWQE WTNLGNCDGD GGGNTNQAPS ANANGPYAAQ LGAAIAFSSA GSSDSDGNIA SYNWTFGDGN SSNQASPSHT YGSQGTYAVT LTVTDNEGAS SSATTSASVT QGGDPGDCQA PQYSAGTQYA AGDIVANGGN LYQCNIAGWC SSSAAWAYAP GTGAHWQDAW SLTSECDDNG NTNQAPTANA NGPYSGSAGI SISFSSNGSA DSDGTIASYS WNFGDGASSS QANPSHSYMN EGTYQVSLTV TDDDGASATA FTTANVTGNG ENQEPVASIS APSSASEGAS VNFSSAGSND PDGSIVSYSW NFGDGTSSQQ ANPSHTYSSA GSYSVSLTVV DNEGANNVAN HSITISGDTG GGTHGDKIIG YFAEWGVYGR NYHVKNIHTS GSADKLTHIV YAFGNVQNGE CKIGDSYAAY DKAYSAADSV DGVADTWDDG VLRGNFGQLR RLKAMHPQIK IVWSFGGWTW SGGFGEAAAN ADHFANSCYD LVFDARWADV FDGIDIDWEY PNDCGLSCDN SGYDGYRVLM QALRNRFGNK LVTAAIGAGE SKQNAADYGG AAQYLDFYML MTYDFFGAFN PQGPTAPHSP LYNYPGMPIE GFSSDHGIQV LKSKGVPAEK ILLGIGFYGR GWTNVTQDAP GGSANGAAPG TYEKGIEDYK VLKNTCPATG TIAGTAYAKC GSNWWGYDTP ATIDSKMDYA KQQGLGGAFF WELSGDTTDG ELIRAIDNGL KN
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