| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3587 |
|---|
| Symbol | |
|---|
| ID | 3966449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4546841 |
|---|
| End bp | 4547827 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637922684 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_529054 |
|---|
| Protein GI | 90023227 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000116276 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.305585 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGAA CAACACAATG GGGGGTGAGC CTAATTGCCT GCCTGCTACT CACAGGCTGC
AACGACTATT TGGCACCAAC AGATTCACTC GAGGTAGCGG TCAAAGGCAT ACATGCAGGC
GCCTTTAGCA GCCAAGCCGA CTACGCGATT GTAGGCTCTA TTCATCACGG CGGTAGCCTG
TGGCAAATAG ACAGCAAAGA GCGACTATAC AATTGGAATC ACAAAGCCGA TGAGGCCACA
ACTATCATCA GCGCTGACTT TTCCCCCGAC GGCAAACTCG CCATTACAGC GGACCCATAC
ACGCTGGTAA TGTGGGAAAC CACCAGCGGT GAAGCAACAC GTTACTGGAC TGCACCCGGT
GAAATTCTCG ACGCCAAACT CGGCCCTAAT GGCAGGCTTG CCCTACTCGG GCTAAGCGAC
CACAGCGCAG TGTTGTTTGA TATTCAAAAA GGCGGCATAA AGCGCACTCT GCCACACGGC
AATCGCGTGC GCAGCGTAGA CATAAGCGAG AATGGCCGCT GGGCATTAAC CGGGTCTGAA
GATTATCACG CGCGCTTTTG GGATTTATCC AATGGCAAGC AGCTGTTTGA TATTAAGCAC
GACGACGATG TACAGCTAGT AACGCTATCC AACGACGGCT CGCATGCACT ATCGGTAAGT
AAGTACGATG CCGCATTGGT ATGGGACACC AAAACAGGAG AAGTGCTTGG CAAAATCCCC
CTGCGCGCCG AAAGGTTAAA ACGCGGTTTG CAATTTACCT CCGCAGCCTT TAGCGCAAAT
AACGAATACT TGTTAACCGG TCGGCCAGAT CAAATAGTGC AATTGTGGCG CGTTGAAACC
TTAACACTTG TTAACCAGTG GGAGGTGCCT AAGCGCGATG CATGGAAACC AACAGGCGCT
TCGATTGTGG CTGTTGGCTT TGGCCAACAG GAGTGGACAT ACCTCGCCAT GAGCTCAAAC
GGCTTTATCC ACCACCTAAA ACTTTAG
|
|---|
| Protein sequence | MLRTTQWGVS LIACLLLTGC NDYLAPTDSL EVAVKGIHAG AFSSQADYAI VGSIHHGGSL
WQIDSKERLY NWNHKADEAT TIISADFSPD GKLAITADPY TLVMWETTSG EATRYWTAPG
EILDAKLGPN GRLALLGLSD HSAVLFDIQK GGIKRTLPHG NRVRSVDISE NGRWALTGSE
DYHARFWDLS NGKQLFDIKH DDDVQLVTLS NDGSHALSVS KYDAALVWDT KTGEVLGKIP
LRAERLKRGL QFTSAAFSAN NEYLLTGRPD QIVQLWRVET LTLVNQWEVP KRDAWKPTGA
SIVAVGFGQQ EWTYLAMSSN GFIHHLKL
|
|---|
| |