| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3576 |
|---|
| Symbol | |
|---|
| ID | 3966438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4535379 |
|---|
| End bp | 4535942 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922673 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_529043 |
|---|
| Protein GI | 90023216 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.625561 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAAAC GCAATAAAGG TTTCTCGCTT ATAGAAATCA TGGTTGTGTT GATGATGGTG
GGGCTGGTTT TCTCTTTGGT TTTATTTAAC TTTGGAGACG ATGGCCCCAG CAAGCGCATG
CAAAAAACAG TAGAGGAATT TACTCTTTGG TCTAAATTTG CAGCGGAAAT GGCCATTGTA
AGTGGTGAAC CTATCGGCTT AATTTTAGAG CCGCCAGAGT GGCAAAAAGA CCCAGATAAC
AACGGTTGGT CTTACGCCTG GCGCAAAATG ACGCATCAGG GTTGGCAGGA AATAGAAAGT
TTGCCAAAGC AGCAAATAGA GCGCGATATA TTGCTGGGTA TTACCCTAGA AGAGCAGCTT
TGGTCCTATA GTGCTGAGGC GCCAGAAATT TCGGAGCCCA TAATAGTCTT TTATCCAACC
GGTGAAGTTA CGCCGTTTGA AATAGAGTTT ACCCACGAGC TAGAAAACGA TTTGCTCGAA
ACCGTTGCGG TAAATCTGTG GGGCGAGGTT GTTTGGAAAG AGCAGCAAGA AGTGCTGGAT
GAAATAAAAG AGCGCAATCT TTAG
|
|---|
| Protein sequence | MNKRNKGFSL IEIMVVLMMV GLVFSLVLFN FGDDGPSKRM QKTVEEFTLW SKFAAEMAIV
SGEPIGLILE PPEWQKDPDN NGWSYAWRKM THQGWQEIES LPKQQIERDI LLGITLEEQL
WSYSAEAPEI SEPIIVFYPT GEVTPFEIEF THELENDLLE TVAVNLWGEV VWKEQQEVLD
EIKERNL
|
|---|
| |