| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3429 |
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| Symbol | |
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| ID | 3966155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4367048 |
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| End bp | 4367986 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922526 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_528896 |
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| Protein GI | 90023069 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000310427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCTTACA TCATAAGTAG GGTAGGTACC GTGGATAAAT TGCAAACTAT TAAAGTGTTT
ATTGAAGTCG CTAAATTGCA TAGTTTCTCG TCTGCTGCTG AGGTGCTGGG CATGTCGGCG
CCTGCAGCTA CGCGCGCGGT TGCGGAATTG GAAGGGCGTT TACGCGTCAA ATTGTTTAAC
CGCACTACCC GTTTGGTACG GCTAACCGAA TCGGGTAGGC GCTTTTTCAA TAGTGCTGTG
GCTATTATCG AGGATTTAGA AGAAGCAGAA GCCGCGGCAG CAGGGCTATA CGCTACACCG
GCTGGCACTC TAACGGTAAC TGCTCCAGTG GTTTTTGGTC AGAAACATGT GATCCCTATT
GTTAATGAGT ACTTAGGCTT GTACTCGGGA GTAAGTGTAA ATGCGATGTT TTACGATCGA
ATAACAAGTT TATTGGAAGA GGAGCTTGAT GTTGCCATTC GTATAGGCCA TTTAAAAGAC
TCAAATCTGT ATGCGACTCA AGTTGGCTCA GTTAGACGTA TCGTGTGTGG CTCGCCGCGT
TATTTTAAAA AACGTGGAGT GCCCAAATGC CCTGAAGATT TACATGAACA TGATTTGATT
TTCCCAAAGA CCTATGAGGG TACAACTACT TGGCAATTTA GAAATGGCGA TAAAACAGAA
CGACTAAAGC TGAATCCAAG ATTGACGTGT AATCAAAATG GGGCTGCGTT AAGAGCCGCA
GTTGAAGGGC ATGGCATTAC TCGCTTGATG TCTTATCAGG TCGGTGAAGA ATTAGAGAAA
GGTAATCTTG AGAGTATTTT GACTGGTTAC GAAGAGGCTC CTTTACCGGT GAATGTTGTT
CATTTAGAGG GCCGCCGTGC GAATGCAAAA GTACGGTCAT TTATTGATTT AGCCGTAGAG
CGGCTGAGAG AGAATCCATT TATTAGCGGA AATATTTAA
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| Protein sequence | MAYIISRVGT VDKLQTIKVF IEVAKLHSFS SAAEVLGMSA PAATRAVAEL EGRLRVKLFN
RTTRLVRLTE SGRRFFNSAV AIIEDLEEAE AAAAGLYATP AGTLTVTAPV VFGQKHVIPI
VNEYLGLYSG VSVNAMFYDR ITSLLEEELD VAIRIGHLKD SNLYATQVGS VRRIVCGSPR
YFKKRGVPKC PEDLHEHDLI FPKTYEGTTT WQFRNGDKTE RLKLNPRLTC NQNGAALRAA
VEGHGITRLM SYQVGEELEK GNLESILTGY EEAPLPVNVV HLEGRRANAK VRSFIDLAVE
RLRENPFISG NI
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