| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3402 |
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| Symbol | |
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| ID | 3966128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4337666 |
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| End bp | 4338961 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922499 |
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| Product | hypothetical protein |
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| Protein accession | YP_528869 |
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| Protein GI | 90023042 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.904792 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGTGT TGAAGTTAAA GGGTAGTTAC ATTCCGTTTA TATTGGTGGC GTTGTCTATT
TGGGGGGCAT CTGCCTCTAC TCATGCTAAT CAAGTAAATG GGGTGGCGGC TTACCATGCA
TTGAGTGTTG AGCAATTTTT GGCTGTGTTG TATACGAGCT CGCCCACCAT TGAAGCCGCG
CCGTTACTCG AGAAAGACAC GCCTGCTCGA ATGGAGATTC GCGTTACTAC AAAGCGATTA
TCGCAGCGCA GATTTGTCAC TATGTGGCTA GAGAGCATGA CGGTAAGCAA TACATCTGAC
GTGGTAGAAG CACAATTAGA AAGCCTAGCC CAGTTTAATA AAATGTTTAA AGGCCGCTTT
ATTGATGGCG ACCGAATTGT GTTTGATTAC CGCCCAGATA GAGGCATGGA AGTAAGCGTT
AATGGCGTGG CATTAGGGGT AATTAAATCG GGTGACTTTT TCCGTTTATT GCTCGCATGT
TGGGTTGGTG ACGTGCCTAT TTCATCTAAT TTAAAGGCTA GCTTACTCAG CCCTGCAGTT
ATAGATAAAA CCTTGTTGGC ACGCTTTAAT GCAGTTACGC CAAGTGCCGA TCGCCGAGAA
GAAATTGTCG CGTGGACAAA AGTACCTGCT AAGCCAGAGC CGGTAGAGCA AGTACAGCCC
AAAGCCGAAG TGGTAAAAGC TGCACTGGTT AAAGCCCCTG TGCAAACACC TGTTGTTCCT
AAAAAGGCGC CTGCGCCGGT TGAGCGGCCA AAGCCTGTGG CAAAAGTGGC GGACAAACCT
GTTGCGTCCC AAATGGTAGA GGCTGTAAAA CAAGAGGAGA AAAAGCAGCT AGAGCCGAAG
CAAGTTGAGC CAAAAGCTGT AGAACCACCT AAACAAGTTG CAGAGCCGCC CAAACAAGTT
GTTGCTGCGT CTAAAGTTGT AGCCCCAGTT ACAACTGCAG AGACGGTAGT AGAGTTAGAG
TCCGACGATG AAACAATGGA AGGCTTGGAT GCGGGCGGTT TATTGGTTAG ACAAAAATAT
TACGATCAAC TATCTAAGCA CTTGATTCAG CAGCAATCTA TTCCACGCCA AGCGTTTCAG
CGGCGCTTAG AGGACGAAGT GCGTGTCTAT TTAACAATAA ACCGCAATGG CACTGTGATG
GCGGCTGAGC TAGAAACAGA ATCGAAATAT AAAATGTTTA ATCAGCAAGC GTTAGAGGCA
ATTGAAAAGG CCGGTGTGTT TCCCGCTATG CCAGAGGAAA TTAGTGGCGA TACCTTCTCC
TTTTCGGTGT TGTTAAATTA TCGCTTACCT ATTTAA
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| Protein sequence | MNVLKLKGSY IPFILVALSI WGASASTHAN QVNGVAAYHA LSVEQFLAVL YTSSPTIEAA
PLLEKDTPAR MEIRVTTKRL SQRRFVTMWL ESMTVSNTSD VVEAQLESLA QFNKMFKGRF
IDGDRIVFDY RPDRGMEVSV NGVALGVIKS GDFFRLLLAC WVGDVPISSN LKASLLSPAV
IDKTLLARFN AVTPSADRRE EIVAWTKVPA KPEPVEQVQP KAEVVKAALV KAPVQTPVVP
KKAPAPVERP KPVAKVADKP VASQMVEAVK QEEKKQLEPK QVEPKAVEPP KQVAEPPKQV
VAASKVVAPV TTAETVVELE SDDETMEGLD AGGLLVRQKY YDQLSKHLIQ QQSIPRQAFQ
RRLEDEVRVY LTINRNGTVM AAELETESKY KMFNQQALEA IEKAGVFPAM PEEISGDTFS
FSVLLNYRLP I
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