| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3400 |
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| Symbol | |
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| ID | 3966126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4335363 |
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| End bp | 4336628 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637922497 |
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| Product | isochorismate synthase; RBL00457 |
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| Protein accession | YP_528867 |
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| Protein GI | 90023040 |
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| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1169] Isochorismate synthase |
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| TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.925382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACACTA CGCAAAATGT TGCACAGCGC TATGATGACC TGCTCGACCT TTATTCACAG
TACAGCAGCC TCTATTTTTC GTCACCTTCG CACAGCCTGT TAGCCAAGCC ACCGTTTGCT
CAATTGGTTT CTGAACGCGT TGGTGATATT GCCCAGCGCG CACAAGAATC ACTTAGCATT
GCTAAGCAGT TGGGGTTTGC CGACCCAATA ATAATGGGCG CAATAGGTTT CGATGGCGAA
GACGCAAGCG CATTGCGGGT TTGTAACAAT GTAATTCGCC AAACAAAAAT GCCTTTTGCT
AGTGGTGATG CTAGTGGCGG CATTGCGTTT AACCCAAGCC AAGCCGGTGC TCACCGTATA
ACGCCAGTGC CCAGTGGGCA AGTATTTAAA AATAGTGTGA ACGAAGCGCT TACTCTTTTT
GAGCAAACAC CGCTGCAAAA AGTGGTGTTG TCGCGCGCGC TGGATGTGCA ATTTGAGTCT
GCACCAAATA TTCCGCTTGC ACTTAAATCG CTGGCTGTAA AAAACCCATT GGGCTATACA
TTTGCGGTGC CGTTAAATGC GGCTGCGCCA GCAACAGTAG TGGGCAACCG CGTATTAATT
GGTGCAAGCC CAGAATTACT TTTATCTAAG TCGGGTAAAG ATATTCATAT TCATCCGCTA
GCGGGTTCAA TAGCTCGCAG CGAAAACCCC AGCGAAGATG CTCAAAAAGC AGATGGGTTA
CTGCAGTCGG CGAAGGACTT ATACGAGCAT CGAGTTGTTG TAGATGCGAT AGAAAAATCC
CTGCGTCCAT TTTGTAAAAG CTTGCGCGTA CCGCGTACGC CTTCGCTTAT GTCTACCGCC
ACCATGTGGC ACCTTGGTAC TCATATTACA GCCGAGCTTA ATGATGAAAC GCTCTCGTCG
CTCGCACTGG CGCTCGCCTT ACACCCTACG CCGGCGGTGG GTGGTTACCC AGTGGCAGAC
GCTAAGCAAG CGATAAAAAA ATTAGAGCAG TACCCGCGAG ATTTTTTTAC CGGTATTGTT
GGTTGGTGTA ATGCGCAGGG CGATGGCGAA TGGGCAATTA CCATACGTTG TGCCGAAGTA
TTTAATCATC GTGTGCGTGT GTATGCCGGT GCGGGTGTGG TTGCAGGTTC ATGCGCAGAA
AAAGAATATG CAGAGACCGC CGCTAAATTT AACACGGTAC TTAATGCGTT TGGGGTCAAG
CCTGTTAAAG AGCGGGTGCC TAAGCAAACC AAAAGCAAGG TAAGCGAGGA GGAAGTGCAT
GTGTAA
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| Protein sequence | MDTTQNVAQR YDDLLDLYSQ YSSLYFSSPS HSLLAKPPFA QLVSERVGDI AQRAQESLSI
AKQLGFADPI IMGAIGFDGE DASALRVCNN VIRQTKMPFA SGDASGGIAF NPSQAGAHRI
TPVPSGQVFK NSVNEALTLF EQTPLQKVVL SRALDVQFES APNIPLALKS LAVKNPLGYT
FAVPLNAAAP ATVVGNRVLI GASPELLLSK SGKDIHIHPL AGSIARSENP SEDAQKADGL
LQSAKDLYEH RVVVDAIEKS LRPFCKSLRV PRTPSLMSTA TMWHLGTHIT AELNDETLSS
LALALALHPT PAVGGYPVAD AKQAIKKLEQ YPRDFFTGIV GWCNAQGDGE WAITIRCAEV
FNHRVRVYAG AGVVAGSCAE KEYAETAAKF NTVLNAFGVK PVKERVPKQT KSKVSEEEVH
V
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