Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3374 |
Symbol | |
ID | 3965923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4300485 |
End bp | 4303487 |
Gene Length | 3003 bp |
Protein Length | 1000 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637922471 |
Product | two-component sensor kinase CbrA |
Protein accession | YP_528841 |
Protein GI | 90023014 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.694338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.111505 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTTTA GTTTTTTACA GGTTGCGCTT ATTTGCTTTA TTTACTTGGG CGTACTCTTT GCCATTGCCT TTGCTACCGA GCGCGGCTGG ATTCCCAATA AAATTGTATT TCACCCCGTC ACCTATATTT TCTCGCTGGG TATTTTTGCC AGTGCTTGGT CTTTTTACGG CGTTATCGAT TTAGCACAAA ATTACGGCTA TGGCGCACTG GCCTATTACC TCGGCACCGG TGCACTATTT TTATTCGCCC CCATTGCCCT TAAACCACTT ATAGAGCTGG CGCGCCGATT TCAAATTAAC TCCACTGCCG ACCTGCTTAC CTTCCGCTAC CACAGCCATT CTGTAGGCGG CATTATTACT TTGTGCATGC TTATGGCGAT GATTCCGCTA CTCGTGCTGC AAATTCAAGC GGTGGCAGAC ACCATTCACA TTCTTACTCG CAATAATGGC AGCAGCCTAG ACGGGCCAAG CTCTGGTTTT GGTACACGTG AAATACTGGC TCTGGTTTAC TGTATTGTGA TTGCCGGCTT TGCCATGCTG TTTGGCTCCA ACCGCGAGCA CCACAAAGGC TTAATTACCG CCATGGCATT TGAGTCGCTG GTTAAAATGA CCGGCCTTTG CGCGGTGGGC ATATTCTCGC TGATAACAAT ATTCGGCGGT CTCGACGGCC TCGACCAATG GCTGCTTGAA AACCCAGATC AACTGGAAAA CCTCTACCAA CCAACGAAAG AAACTTCCTC CCACACCCTT CTGCTGGTAT TTGTGGCCAC TGCTGTAGCT ATGCCGCACA TTTTCCACAT GACCGTGGTG GAGAACCCCG TCAAGCATGC CACCCAAACG GTAACGTGGG CTTTTCCGCT ATTTTTATTG GTAATGGCGT TGCCGGTATT TCCAATTCTT TGGGCTGGCA TCGAGCTAGA TACGCGTATC CCAGCACAGT ACTTCCCCTT GGCCGTACCC ATTGCCGCGG GCAGCTCTAC CTTCACAATC ATTTCGTTTG TCGCCGGCTT ATCTGCCGCC ACCGGCGCAA TGATTGCAAT CGCCCTCGCG CTTGCCACCA TGGTACTCAA CCACTGGATT CTGCCCGCCA CCCCACTGCA AACTAAACGC GAAATTTACG GCCAGCTCAT TTGGATGCGC CGTATTCTTA TTGCAGTGGT TATTTTGGTG GGCTTTATGT TCTACCGCTT GCTGGGCAGC CACTTCAATC TAACCGACTT GGCGCTCACA GCTTTTATCG CCACTCTCCA ATTTTTACCT GGTGTGATTG CTGTTGCTCA CTGGAGCCGC GGTAACGGCA AAGGCCTATT GGCAGGGCTG TTTGTAGGTA TGCTCACTTG GATGGTGGGG CTGATGATTC CGCTGGTAAT GGGGTTAAAG CAAACGCAAT TTACCACCTT AGGTGTAACT TTCGACTTGG GTATTAACCA TTGGAACAAC ATCACGTTAT GGTCGCTTGG TTTAAACACC CTTACCTTCG TGGTGGTATC GCTTATCACC AAGCAGTCCG ATGCCGAGCG CTACAGCGCA GAGCTGTGCT CGGAAGATGA GCTCAGCCAC CCTATTCGCC TTATTCTGGA TATTCGCTCA CCCGACGACA TCGCCAACCG CTTGGCGCTG CGTATCGGTG AATCTACTGC GCGCACCGAA GTAAGCCGCG CACTTAAAAA CCTTGGCCTC AACCCCAACG AAAGCCGCCC CTACGCGCTG CGTCGCCTGA GGGATGAAGT AGAAGCCAAC CTTTCTGGCT TGATGGGTAT TGCCATGGCC AGTGAGATTA TGGATAAACA AATCCCCTTC AAAATGCCCG AAACCGAAGG CGAAACAGAC ATCAACCTGA TTGAAAGCCG GCTTTCACAG TTTCGCGACC ACCTCACAGG TTTGGCCGCC GAACTTAACA ACCTGCGCCT ATACCACCGC CGCACACTCG AAGAGCTGCC GCTATCAGTG TGCTCTGTGG GGCAAGATAT GGAAATTTTA ATGTGGAATG GCGCCATGGA AGCACTGACC GGTATCGAAA GCACATCGGT AACCGGCTCT CGACTCGAAG AAGCACTTGA CCCATGGGGC GACCTGCTCA CCCGGTTTGC ACTATCCCAC TCGCCCCATT TCTACAAGCA AGAAATAGAA CTGGCGGGCA GGCAGCACTG GATTAACCTA CACAAGGCCT CCATTCCCTC ATCGCTTGCC AACAAAGTAG ACGGGCAAGT GATACTGCTA GAAGACGTTA CCGAGTTGGT ATTGCTCGAG CAAGAGCTGG TTCACAGCGA ACGCTTGGCA TCCATCGGCC GACTCGCGGC AGGGGTAGCC CACGAGATAG GCAACCCCGT GACAGGCATA GCCTGCCTTG CTCAAAACAT GAAATACGAG ACCGACGACC CAGAGATTCT CGACACAGCC CAGCAGATAT TGTCGCAGAC CGACCGCGTA TCGCGCATTG TTCACTCACT GGTGAGCTTC TCTCACGCTG GTCAACAAAA AGATGAAGAG CTGCACGCCG TGAATTTGCG CGAATGCGCG CAAGAAGCAA TTAACTTACT CGCCCTGCAA ATAGAGAAAA AGCAGGTATG CTTCCACAAC AGCGTGGATG AAGCCATTCA AGTGGTTGCA GATAGCCAGC GGCTTATCCA AATCTTTGTA AACCTGCTCT CAAATTCTCG CGACGCTTCT GAACCAGACA CCAATGTCAC CATAGAAGCC AGCCAAGAGG GGCGCACCAC CACCATTAGC GTCACCGACG AGGGGCCGGG TATTCCGCTA GAAATACGCG ACCGAGTACT CGAACCCTTC TTCACCACCA AAGAGCCCGG CGAGGGCACA GGCCTTGGCC TAGCTATGGT GTACAGCATT GTGGAGGATC ATCAGGGCAC TTTGGATATT GTCAGCCCAG TGGATTTGGT GTTACAAAAG GGCACAAAAT TTGTGATCAA ACTTCCCAAT TCACTTGAAG TTCACGCCGT GAAAGGTAAC ACTAGGAGAT CGACTGCGGC GCCTAAACCT TAG
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Protein sequence | MTFSFLQVAL ICFIYLGVLF AIAFATERGW IPNKIVFHPV TYIFSLGIFA SAWSFYGVID LAQNYGYGAL AYYLGTGALF LFAPIALKPL IELARRFQIN STADLLTFRY HSHSVGGIIT LCMLMAMIPL LVLQIQAVAD TIHILTRNNG SSLDGPSSGF GTREILALVY CIVIAGFAML FGSNREHHKG LITAMAFESL VKMTGLCAVG IFSLITIFGG LDGLDQWLLE NPDQLENLYQ PTKETSSHTL LLVFVATAVA MPHIFHMTVV ENPVKHATQT VTWAFPLFLL VMALPVFPIL WAGIELDTRI PAQYFPLAVP IAAGSSTFTI ISFVAGLSAA TGAMIAIALA LATMVLNHWI LPATPLQTKR EIYGQLIWMR RILIAVVILV GFMFYRLLGS HFNLTDLALT AFIATLQFLP GVIAVAHWSR GNGKGLLAGL FVGMLTWMVG LMIPLVMGLK QTQFTTLGVT FDLGINHWNN ITLWSLGLNT LTFVVVSLIT KQSDAERYSA ELCSEDELSH PIRLILDIRS PDDIANRLAL RIGESTARTE VSRALKNLGL NPNESRPYAL RRLRDEVEAN LSGLMGIAMA SEIMDKQIPF KMPETEGETD INLIESRLSQ FRDHLTGLAA ELNNLRLYHR RTLEELPLSV CSVGQDMEIL MWNGAMEALT GIESTSVTGS RLEEALDPWG DLLTRFALSH SPHFYKQEIE LAGRQHWINL HKASIPSSLA NKVDGQVILL EDVTELVLLE QELVHSERLA SIGRLAAGVA HEIGNPVTGI ACLAQNMKYE TDDPEILDTA QQILSQTDRV SRIVHSLVSF SHAGQQKDEE LHAVNLRECA QEAINLLALQ IEKKQVCFHN SVDEAIQVVA DSQRLIQIFV NLLSNSRDAS EPDTNVTIEA SQEGRTTTIS VTDEGPGIPL EIRDRVLEPF FTTKEPGEGT GLGLAMVYSI VEDHQGTLDI VSPVDLVLQK GTKFVIKLPN SLEVHAVKGN TRRSTAAPKP
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