| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3301 |
|---|
| Symbol | |
|---|
| ID | 3965812 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4211930 |
|---|
| End bp | 4213024 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637922398 |
|---|
| Product | lipoate synthase |
|---|
| Protein accession | YP_528768 |
|---|
| Protein GI | 90022941 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1702] Phosphate starvation-inducible protein PhoH, predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0967934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGACAATC ATTTTCATAC TGAAGAGCTC ACCTTCGAGC CCAGTGACGC ACACCGTCTC
GCTGCCCTCT GCGGCCAATT TAATGGTCAC ATCAAACAAA TAGAACAGCG CCTACAACTC
GATATTCGCA TTAGAGAAAA CACCGCCCGC CTTACCGGCC CGCAGCAGAG TGTTGCCCTT
GCTCGCGATA TATTGCGCCA ACTATACAAA GACACCGAGA CTCAACCCGA CCTTTCCCCC
GATCACGTTC ACCTCGCCAT ACAGGAATCG TTAATGGACA CAGCTATCGA AGAAGTGACC
CTCGACGACG CAGCGCCTAA CGCCGATATA GAACAGGCCT ACGCCAGTGT CAGTATGATC
AAAACCAAAA AGTGTACGGT AAAACCGCGG GGAGGCAATC AGTCTAACTA CGTTATGGCT
GTGCGCGCGA ACGATATAAA TTTTGGTATT GGCCCTGCTG GTACAGGTAA AACATACTTG
GCCGTAGCCT GCGCCGTGGA AGCGCTGCTT AAAGACGAAA TTGAGCGCAT ATTACTTGTG
CGCCCAGCGG TTGAAGCCGG CGAAAAGCTG GGCTTTTTAC CCGGCGACCT AAGCCAAAAA
GTGGACCCAT ACCTGCGCCC ACTCTACGAC GCACTGTACG AAATGCTGGG CTTTGAAATT
GTAGAAAAAC TTATAGAGCG CAGCGTGATA GAAGTGGCCC CGCTGGCGTA TATGCGCGGC
CGCACACTGA ACAATGCCTT TGTTATTTTA GATGAGAGCC AAAACACCAC CCGCGAGCAG
ATGAAAATGT TCTTAACGCG TATTGGCTTT GGCTCCACCG CGGTTATTAC CGGTGACCCG
TCACAGGTAG ACTTGCCACG CGGTGCCGCC TCTGGCTTGC GCCACGCCAT CGAAATTTTA
GAAGGCGTAG AGGGCATTAG CTTCACCTAT TTCACCTCTC GCGATGTTGT GCGCCACCCC
ATAGTGCAAC GCATTGTGGA CGCCTACGAA AAAGCGGAAG CCAAGGCAGA AAAAATTGCC
AAGGAAGAAG CCGAAGAGCG GGCGAGATTA CGCGCCGAAT TCAAAGCTGA GCAAGCTCAA
CGCAACGGCG AATAG
|
|---|
| Protein sequence | MDNHFHTEEL TFEPSDAHRL AALCGQFNGH IKQIEQRLQL DIRIRENTAR LTGPQQSVAL
ARDILRQLYK DTETQPDLSP DHVHLAIQES LMDTAIEEVT LDDAAPNADI EQAYASVSMI
KTKKCTVKPR GGNQSNYVMA VRANDINFGI GPAGTGKTYL AVACAVEALL KDEIERILLV
RPAVEAGEKL GFLPGDLSQK VDPYLRPLYD ALYEMLGFEI VEKLIERSVI EVAPLAYMRG
RTLNNAFVIL DESQNTTREQ MKMFLTRIGF GSTAVITGDP SQVDLPRGAA SGLRHAIEIL
EGVEGISFTY FTSRDVVRHP IVQRIVDAYE KAEAKAEKIA KEEAEERARL RAEFKAEQAQ
RNGE
|
|---|
| |