| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3285 |
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| Symbol | |
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| ID | 3965777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4195553 |
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| End bp | 4197835 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637922382 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_528752 |
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| Protein GI | 90022925 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000203475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.48487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG AGAATGTAAA CATCGCGAAG CAGGGCTTGC TAGTTGTTTT GGTAAGCTTC
TTTATGAGCT TTTCCCTAAT GGGTTGCGCC AAAGAAATTC TGGTGAACTC GCAGGAACAA
TACGCAGAAG CATTGAGTTC AGTTAAGCCT GGCGACACCA TTGTGTTGGC TAATGGCGAA
TGGAAAGATT TCGAAATTGT ATTTACAGGT AAGGGCACTG AAAAAGCGCC AATCACCCTA
ACTGCGCAAA CAAAAGGCAA GGTGTTAATT ACTGGCGAGT CAAACTTGGC GCTTGCCGGT
GAGCATTTGG TGGTATCTGG TTTGGTGTTC ACTAATGGCT ACACACCAAG CGATGCCGTT
ATCTCATTTA GAGCTGCTAA ACCCGTAGCG GAAGACGACT ACAGTACAGT TGCAATGCAT
TCTCGAGTCA CCGAGGTGGT GATTGATAAT TTTAGCAACC CAGAGCGTTT TGAAACTGAC
TCGTGGGTGC TTATCTATGG CAAACACAAC CGTGTTGATC ACAGTAACTT CACCGGCAAG
CGCAATAAAG GTGTGTTGAT GGCTGTGCGT TTAGATACCA CGCATAGCCG CGAAAACCAT
CATGAAATTG ATCACAACTA CTTTGGTCCG CGCGATATTC TTGGCTCCAA CGGCGGAGAG
ACTTTGCGTA TTGGCACGAG CCACTTCTCT CTTTCAGACT CTTTCACTTT AGTAGAAAAC
AACTATTTCG ATCGCTGTAA CGGTGAGTTA GAGATTATTT CTAACAAGTC TGGGTCTAAC
AAGTTTATTG GAAATACCTT CTTTGAATCG CGTGGCACGC TAACTATGCG TCACGGTCAT
GGAAACGTAA TCGAAAACAA TGTGTTCTTT GGTAATGGCA AAGATCACAC CGGTGGTATT
CGTGTAATTA ACGAGCGCCA AACGGTACGC AACAACTACA TGTCTGATCT TGCAGGCTAC
CGCTTTGGTG GTGGTTTAGT TGTTATGAAT GGCGTGCCTA ACTCAGCGAT AAATCGTTAC
CACCAAGTAA AGAATGCCGT TATAGAAAAC AACACGCTGG TGAATGTCGA TCACATTCAG
CTGGCAGCTG GTAGCGATAA AGAGCGAACA GCTACACCCG TGGATTCCAA GTTTTCAAAT
AACTTGATCG TCAACGATGA TAAACGCAAC CCGTTTACCG TATACGACGA TGTTAGCGGC
ATAACCTTTT CTAATAACAG TATTAGTGCA GCGTCCAAAG AGCTAAAGAA AGGCTTTGAA
GTTGATGCCG CTAAGATTGC TAAAAACGAT CAAGGCATGG TGTTTGATGC CTCCGGTACT
TACGGTGCAA GCAAGTCGCT AAAACCCGTT CGCAAGCAAG ATGTGGGCGC TAGCTGGTTT
GTTAAGTCGG AAGATCGCAA AGCATTCCAA TCGGGTAAAA CAGTTAAAGC TGGTGCTGGC
CAAAACTCTA TCTACGATGC AGTAGAGCAG GTAGAAGATG GTGGCGTTGT CGAACTGGCA
GCGGGTGATT ATGTAGAAGC TAAAACAATC ACTATTAACA AAACCGTAAC CGTTAAAGCA
GCAGCCGGCG AAAAAGTAAA TATTGAGTTC TACAAAAAGT CGCTGTTTGA AGTGGTTGAT
GGCGGCAGCT TACAGCTTGA AGGTTTGGCA ATTAGCGGTG CGAGTTCGCC AGACGATGTA
GGTAATGCGG TCGTGCGTAC ATCGCGTTAT TCCATGTTAA AAAATTATCG CTTAGAGCTT
AAAAATTGCG AGTTCACAGA CCTAGATGTA AACAGATTCT TCAACGTTGT ATCGGTTAGC
AAGTCTACGT TAGCAGATAA CATTTTGTTA GAAAACGTAA GCGTTAAAAA GGTTACTGGC
TCAGTGTTGA AGTTAGATCT TGAGTCCGAT GATTACGGTA TTTATAACGC AGAATACGTC
ACGATTAAGA ATAGCCAGTT TGAAGATGTA GATGGCCCAT TGATTACTTA CTACCGTGGT
GGTACCGATG AAAGTACTTT CGGCCCACAC TTTGAAATGA CTGGCAGCAC CTTAAAAAAT
GTAGGTAATG GCAGCAAGAA CAAGTTGAAC GCGTCACTGT ATTTACATGG TGTACAGGTA
ACGGCTATTT CAAACAACAA ATGGCTAGAT AGTAAGCCTG TAATTATTGA GCACACTGTG
GGTGAGCCTG TAACAAGCGT TGTAGATAAC ACGTTTGTGA ATACAGCTAA GTTAGATTTA
CAAGAGCTGT ATTCTAAGAA GACAACCACC GCAGTAATTA AAAATAATAC CTATAAAAAA
TAA
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| Protein sequence | MKKENVNIAK QGLLVVLVSF FMSFSLMGCA KEILVNSQEQ YAEALSSVKP GDTIVLANGE
WKDFEIVFTG KGTEKAPITL TAQTKGKVLI TGESNLALAG EHLVVSGLVF TNGYTPSDAV
ISFRAAKPVA EDDYSTVAMH SRVTEVVIDN FSNPERFETD SWVLIYGKHN RVDHSNFTGK
RNKGVLMAVR LDTTHSRENH HEIDHNYFGP RDILGSNGGE TLRIGTSHFS LSDSFTLVEN
NYFDRCNGEL EIISNKSGSN KFIGNTFFES RGTLTMRHGH GNVIENNVFF GNGKDHTGGI
RVINERQTVR NNYMSDLAGY RFGGGLVVMN GVPNSAINRY HQVKNAVIEN NTLVNVDHIQ
LAAGSDKERT ATPVDSKFSN NLIVNDDKRN PFTVYDDVSG ITFSNNSISA ASKELKKGFE
VDAAKIAKND QGMVFDASGT YGASKSLKPV RKQDVGASWF VKSEDRKAFQ SGKTVKAGAG
QNSIYDAVEQ VEDGGVVELA AGDYVEAKTI TINKTVTVKA AAGEKVNIEF YKKSLFEVVD
GGSLQLEGLA ISGASSPDDV GNAVVRTSRY SMLKNYRLEL KNCEFTDLDV NRFFNVVSVS
KSTLADNILL ENVSVKKVTG SVLKLDLESD DYGIYNAEYV TIKNSQFEDV DGPLITYYRG
GTDESTFGPH FEMTGSTLKN VGNGSKNKLN ASLYLHGVQV TAISNNKWLD SKPVIIEHTV
GEPVTSVVDN TFVNTAKLDL QELYSKKTTT AVIKNNTYKK
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