Gene Sde_3260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3260 
Symbol 
ID3965752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4159173 
End bp4160675 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content46% 
IMG OID637922357 
Producthypothetical protein 
Protein accessionYP_528727 
Protein GI90022900 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00293464 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTTGCTA GCAACCTCGA AGACCCTACT TACTATATAA AATATAAAGG TGTTTACATG 
AATACTAATA GGAAACAAGT CAACCAAAAC CTCATCGCGC TATTGGGCTT AATGTTGCTA
ATGCTATTTA CACCTCATGG CTATGCGCAA GACCAATGCA ACACCACGCT TGAGTGCAAA
ATACTCCACG GCGATACAGC CACGGATTGT AAAAATAGTC GCTCAGATAA CAGTATTTGC
ATGTGTGGAA GTACTGAATG TGCAGTAGAT AATCCACAAC CCGAACCTAG CAATTCCGCC
GCAGTACCGG GCCTAATACA AGCAGAAGAC TTTACCGATT ACTACGATGT AACGGCGGCT
AATCACGGCG GCGCTTACCG CTCCACAGGC GTAGACATTC AAGTTACCAC AGACACCAAT
GGCGGGTACA ACGTAGGCTG GATAGCCGCT AATGAATGGC TAGAGTACAA CATAAACGTA
CTGCAAGCTG GTAACTACAC CGCGAATATT CGTGTTGCAT CTAATAATGG TGTTGGCATG
TATAGCTTGG CGGTAGATGG TGTAACGGTA AGTGGCACCA ACACCGTTAA TGGCACGGGT
GGCTGGCAAG TTTGGATTAC CCAAACCGCA AACCTTGGCT ACTTAACCCA AGGCGAGCAT
ACGTTGCGTA TAGCAGTACA GGCTGGCAAT TTTAATATTA ACTGGTTAGA GCTGCTGCTA
GCGGGTACTC AGCAACCAGA TATGCTTGGT GTATTTAATA AAAGCCGCGA CCTGTTGTTA
GCAAATTTCG ATAGCCGCCC AGACCCAGAC GATATTCATT CAGTAGCGGC CCTGGCAACA
ATGCTAAAAG ATTCCCGTTT TAGCAATGTG CAATACCACG CAGTATCGGG TGCTTACGGT
ATACAAGGTG GTGATTACAT TGAAGCTACA CATTTGTTTA ACTTAGCCTT TGGTGCCGGT
AATTGGTCCA ACGCGCACAC CAATAGAGAT GTGGCGCTTA CAACTGTTTA CAACAAAGTT
GCCGCAACGT TAACCAATGG TGGTGATATT TGGGTTCAAG AGGCCGGTCA ATCCGACTTT
AGCGCCGATT TGGTACGCAG AATCAAACAA CAGTTACCCG CTATTAATAC GCAAACGCGA
ATTCATATAG TGCAGCATAG TAACTGGAAC CAAGACAAAA CCACTCCAGC CGATTTAACC
TATGTAAAAA ACCAAACCGA CTACAAAAAA ATTGCTGATG GCAATTCCAC AGGCAACGGC
ACGCCTGGGT TTAACTCATC CAGCAGCGCC AACTGGAACC GCGCACTAAA CCACGCGCAA
GTAGGCGCAA TTTGGCAAGA AGCAAAACGC ATAGCCGACA ATGCCATCGC CAACCACCAA
GGCTGGCAAA ACCCCAATAT TCGAGACGGC GGTATGGACT TCTCGGATGC AGTCGAAGAC
TGCTGGATAT TCGGCTTCAA CTCACTCACA AATATAAACA GCTTTTTTGA TGAGTTTTTA
TAG
 
Protein sequence
MFASNLEDPT YYIKYKGVYM NTNRKQVNQN LIALLGLMLL MLFTPHGYAQ DQCNTTLECK 
ILHGDTATDC KNSRSDNSIC MCGSTECAVD NPQPEPSNSA AVPGLIQAED FTDYYDVTAA
NHGGAYRSTG VDIQVTTDTN GGYNVGWIAA NEWLEYNINV LQAGNYTANI RVASNNGVGM
YSLAVDGVTV SGTNTVNGTG GWQVWITQTA NLGYLTQGEH TLRIAVQAGN FNINWLELLL
AGTQQPDMLG VFNKSRDLLL ANFDSRPDPD DIHSVAALAT MLKDSRFSNV QYHAVSGAYG
IQGGDYIEAT HLFNLAFGAG NWSNAHTNRD VALTTVYNKV AATLTNGGDI WVQEAGQSDF
SADLVRRIKQ QLPAINTQTR IHIVQHSNWN QDKTTPADLT YVKNQTDYKK IADGNSTGNG
TPGFNSSSSA NWNRALNHAQ VGAIWQEAKR IADNAIANHQ GWQNPNIRDG GMDFSDAVED
CWIFGFNSLT NINSFFDEFL