| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3253 |
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| Symbol | |
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| ID | 3965743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4151340 |
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| End bp | 4153115 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637922348 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_528720 |
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| Protein GI | 90022893 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000563369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0756352 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAG GCACCTCTTC ACCACAAGCT ACGCAGCAAA AAACCTTAGG CCTACTTAAA
GGCCGAAACG CCCTTGCCGG CCTTATATGC GCCATAGCAT TTACCGGCTG CGCCAACGCC
CCCGAGCTTG TAGAAACGCC CACCATTACC GAGCCCGTAT TACTTACCCC AGTAAAAGTA
GCCGACCGAG CCTTTACCAC AGACCAGCTC TACTCTTTGC TGGTAGCAGA AATGGCCATA
GAGCGCCGCC GCTACGACAT AGCCTTAGAT AACTACGTAC AACAAGCCAA TGCAACCCGC
GACCCAGAAG TAACCGCTCG CGCAGCGCGT GTAGCCCGTG TATTAAAAGC CCACGAGCCA
GCATTAGAAA TGTCGCAAAT TTGGGTAGAA CTAGAACCCT ACAACAGCGA AGCACTATTA
ATACTAACAG ACGAATTGAT AGAAGCAGGT CAACTTGAGC AGGCCTTTGC TCACGCTCGC
AAACTGTTAA ACCAAGGTGA ACAAGTTGCC TTCGAAGCCA TTGCAGCCCG CGCGGCAGAT
GGCCCACCAG AAACTACGCG CAACCTAACC AGCCTGTTCG AAGAGATGCT GGCACAGCAC
CCGCAAAACC CACAACTATT AGTTGGCTAC AGTTTATTGC TGGAGCAAGC TAAGCGCCCA
GAAGATGCTC TAGCTGCGGC CACACAGGCC ACCCAAATAG ACCCCGAAAA TATACGTGCG
GTTTATCAAG AATCGCGCAT GCTGCAGCTA ATGGGTAAAC ATAGCCAAGC TATAGAGAAA
ATGGGCAAAT TAATTGCCCT CACCCCACAC AATACCTCGC TGCGCACACG TTATGCGCAC
TACCTCGTCA GCCACGATTT AGAGCTTGCA CGCCAGCAAT ACCAAATTTT GTTTAGCCAG
CGCCCACAAG ATGCCGACAT CTTGCTATCG CTAGCGCTGG TTGAAATGGA AAGCGAATTG
TACGAGAGCG CTATTAGCCA TTTTCAGCAA CTTATAGACC GCAAGCAGCA CGACGCAACC
GCTCACTACC AGTTAGGCAA AATACACGAG CTGCGCAATC GTCCAGATTT AGCCCTGCAA
CACTACAAGG CTGTAACCCC AAGCCAAGAG TTTTTATCTG CCGTATATAA AGCATCAGAA
ATGATGGCCC AGCAGGATAT CTACAACGCC CTGCAATACG TGAAAGGCCT ACACAGCAGC
ACGCCTAAGC AGTATCGCGA TAGCCTATAC CTGCGCGAAG CCAATTTACT GCTAGACGCA
GGCAACCCCG ATGGCGCCCT AGCCGCGATG GCAAAAGGCC TAGATATAGC ACCAGACAGC
GTAAACCTGC TTTATAGCCG CGCCATGCTT TACACCCAAC TAGATGACCT AGCGCTCGCC
GAAGCCGATT TCACCCAAAT ATTAGAGCTG CGCCCAGATA ACGCGGCAGC CTTAAATGCG
CTTGGCTACA CCCTTGCCGA CCGCACCGAC AGGCTGGATG AAGCCTACAA CTACATTAGC
CGCGCCCTAA GCCTAAACCC AGATGACCCA GCCATATTAG ATAGCATGGG CTGGGTGGAG
TACCGCTTGG GCAACATTCC CGCTGCACTA AAACGCCTGC GCCAAGCCAT GAGCATATTG
CCCGACCACG AAATAGCCGC CCACCTAGGT GAAGTACTAT GGGTAACCGG CAATAAAAAC
GAAGCGATAG AAACGTGGAA AAAGGGGCTA GAAAACAACC CCACAAGCAG CGTAATTGAA
AGCACCCTAG AGCGATTGAA TGCCACACTC CCCTAA
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| Protein sequence | MKAGTSSPQA TQQKTLGLLK GRNALAGLIC AIAFTGCANA PELVETPTIT EPVLLTPVKV
ADRAFTTDQL YSLLVAEMAI ERRRYDIALD NYVQQANATR DPEVTARAAR VARVLKAHEP
ALEMSQIWVE LEPYNSEALL ILTDELIEAG QLEQAFAHAR KLLNQGEQVA FEAIAARAAD
GPPETTRNLT SLFEEMLAQH PQNPQLLVGY SLLLEQAKRP EDALAAATQA TQIDPENIRA
VYQESRMLQL MGKHSQAIEK MGKLIALTPH NTSLRTRYAH YLVSHDLELA RQQYQILFSQ
RPQDADILLS LALVEMESEL YESAISHFQQ LIDRKQHDAT AHYQLGKIHE LRNRPDLALQ
HYKAVTPSQE FLSAVYKASE MMAQQDIYNA LQYVKGLHSS TPKQYRDSLY LREANLLLDA
GNPDGALAAM AKGLDIAPDS VNLLYSRAML YTQLDDLALA EADFTQILEL RPDNAAALNA
LGYTLADRTD RLDEAYNYIS RALSLNPDDP AILDSMGWVE YRLGNIPAAL KRLRQAMSIL
PDHEIAAHLG EVLWVTGNKN EAIETWKKGL ENNPTSSVIE STLERLNATL P
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