| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3235 |
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| Symbol | |
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| ID | 3965708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4121314 |
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| End bp | 4123449 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922332 |
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| Product | M50 family peptidase |
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| Protein accession | YP_528704 |
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| Protein GI | 90022877 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.347928 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGGATT CTATTCAGCA CCTTCGCCCC GCACTGCAAC GTCATATTGC TTTTCAACCC
CGTAGTTACC GTGGCGAAAA CTGGTATGTG CTAGAAGATA AAAGTAACGG TACTTTTCAT
CGCCTTAGTA TTGTTGCTTA CCACTTAATA GGTTTAATGG ATGGCCATCG CACGGTAGCG
CAAATATTGG AGCAAGCCAA TACAGTGGCG CTGGATGTGC CAGAAGAATA CCTGCCCGAT
GAAGAAGATC TAATTGCCCT TTTGCAGTAC CTTTACGTAG CCGATCTACT TATTTGCGAC
TTTCCGCCCA GTACCCAAGA AATATTCTCT CGCCAAAAAA ATAAAAAACA GCAGCGCTGG
AAGCGGTTGC TGCTAAACCC TATGTCGTGG AAAATTTCGC TCGGCAACCC CGATGCATTT
CTTAATAAAA TAAGCGTTGT AGGCAAAATG CTTTGCCACC CATTAACGGG TGTAATTTGG
TTGCTTGTAG TGGGTTTGGC TGTATTGCAG ATAGGTGCCC AGTGGTCTGC GCTTACCTCT
GGTGATTTTG GTGGAATGTT TTCACCGGCT AATATGTTTT TACTGTGGTT AACCTACCCG
CTATTAAAAG TTATTCACGA GTTGGGGCAT GCGCTATTTA CCAAAGCGTG GGGTGGGGCA
GTAACAGAGT GCGGGGTAGT GTTTATTTTA GGTACGCCGC TGCCCTATGT GGATGCCACC
GCGTCGACCG GTTTTAGCAA AAAATACCAA CGATTAATGG TAAGCGCCGC CGGTATGGCT
GTTGAATTAT TTGTAGCTGC GTTGGCGTTT TTGATTTGGC TAATAATAGA AGACGGCATA
GTGCGCAATA TTCTATTTAA TTTAATGGTG CTGGGCAGTG TGTCTACCTT AATTTTTAAC
GGTAACCCAT TGCTTAAGTT TGATGGCTAC CATTTGTTGT GTGATGCCAT AGAGGTGCCC
AATCTCGCCG CGCGTGCTAC CGAGCAATTT AAGTATTTAG CCAAGCGGTT TGGTTATGGC
GTTAAAGGCT TGTACTCGCC TGCATCTACT TTTATAGGCG GCGTTGGTTT TACGGCTTAC
GCGGTTGGTG CATTTTTTTA TCGTATATTT ATTTTTGCCA CCATTATTTA CATTGTGGCC
AAGTTTTCGC TAGAGCTTAG TGTGTTTCTC ACGCTCTGGC TGCTGTTTTT TCAAGCCTTG
TGGCCGTTAA GTAAATACAT TCGCTATTTG ATAGTGGATA AAAGTATTAC CGCACACCGC
AAACGCGCGG TGGCTTTTAG TGTTGCGGTA AGCTTAACCA TAATAGTTGC ATTATTTGTT
GTGCCTATGC CGCTTTCTAC CAAAGCCGAG GGCGTGGTGT GGCTGCCGAA CGATAGCCAA
GTGCGCTTGC AGGTTGCAGG CGAAGTGGCG CAAGTGCTTG TGAACGATGG CGATGTAGTA
CAAAAAGGCC AGCCAATAAT TTTATTAAAA AATGCGCAGT TAGAAGCTTC GCTAAAAGTT
CAGCAGGCGG TTTTACGCGA GTACCGCGCG CGCTTCGAAG AGGTATGGTC GGCAGATAGA
GCGCAAGCAG GGCTATTAAG TGAAGACATT CGCGCAGTAG AAGATGAAAT TGCATTTTTA
CAGCAAAAGG TGGCCGCCCT AAACGTTGTT AGCCCCGCCA GCGGTACAAT TAATTTTTCT
GTTCCTTACT ACCTGCCAGG TAGTTATTTT CAGCAGGGAG ATATTGCCGG CTACGTAGTG
CGCGCAGAAC CTGTAAATAT TCGCGTAGCC CTTACCCAGC ACGAAATTGG CTTAGTACGC
AAAGATACAC AAGCCGTTGA GGTGCGCCTT GCGCATCGCC TTGCACAAAC TCATCGCGGC
GAAATAGAAC GCGAAGTACC CGGGGGGACT TACACCTTGC CGAGTTTGGC GTTAAGCGTT
GCGGGTGGGG GGCGACTTCA ACTAAGCAGT GAGCAAGGTA AAGAAGAGCA ATCGCAAAAC
AGAATATTTC TGTTGGATGT GGCGTTACCT CGGTACGAAC AAGCAGATTA TTATGGCGAG
CGAGCGCATG TGCTGTTTAC CCACTCGCCA GAACCAATTG CTGAACAAGT TTACCGTCGT
TTAAGGCAGT TATTTATCAG TACGTTGCTA TACTAA
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| Protein sequence | MWDSIQHLRP ALQRHIAFQP RSYRGENWYV LEDKSNGTFH RLSIVAYHLI GLMDGHRTVA
QILEQANTVA LDVPEEYLPD EEDLIALLQY LYVADLLICD FPPSTQEIFS RQKNKKQQRW
KRLLLNPMSW KISLGNPDAF LNKISVVGKM LCHPLTGVIW LLVVGLAVLQ IGAQWSALTS
GDFGGMFSPA NMFLLWLTYP LLKVIHELGH ALFTKAWGGA VTECGVVFIL GTPLPYVDAT
ASTGFSKKYQ RLMVSAAGMA VELFVAALAF LIWLIIEDGI VRNILFNLMV LGSVSTLIFN
GNPLLKFDGY HLLCDAIEVP NLAARATEQF KYLAKRFGYG VKGLYSPAST FIGGVGFTAY
AVGAFFYRIF IFATIIYIVA KFSLELSVFL TLWLLFFQAL WPLSKYIRYL IVDKSITAHR
KRAVAFSVAV SLTIIVALFV VPMPLSTKAE GVVWLPNDSQ VRLQVAGEVA QVLVNDGDVV
QKGQPIILLK NAQLEASLKV QQAVLREYRA RFEEVWSADR AQAGLLSEDI RAVEDEIAFL
QQKVAALNVV SPASGTINFS VPYYLPGSYF QQGDIAGYVV RAEPVNIRVA LTQHEIGLVR
KDTQAVEVRL AHRLAQTHRG EIEREVPGGT YTLPSLALSV AGGGRLQLSS EQGKEEQSQN
RIFLLDVALP RYEQADYYGE RAHVLFTHSP EPIAEQVYRR LRQLFISTLL Y
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