| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3118 |
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| Symbol | |
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| ID | 3965518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3983005 |
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| End bp | 3984696 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637922215 |
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| Product | response regulator receiver domain-containing protein |
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| Protein accession | YP_528587 |
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| Protein GI | 90022760 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATAC TAGTAGTTGA TGACCACGCC TATAACCGTG ACCTACTCCA ATTTATTTTA
GAGGACGAAG GGCATAGTTG CTGCGAAGCA GATTCTGGTG AAGCCGCCGT CAAAATGTTT
TTAGAAAACG AAGACATTGA TCTAATTTTA ATGGATGTAA ATATGCCACT TATGAACGGC
ATAGAAGCTA CCGAAAAAAT ATCTGAGATT AAAGGCCCAC GCGCTGTCAC CATTATTTTT
GTAACCGCTC TAGACGACAG CGACATACTT ATTCAATGCT TAAACGCTGG CGGTGACGAC
TTTGTACCAA AGCCAGTAAA TGAATCTATT CTTATTTCCA AAATTAACGC ACATGCACGA
AACATAGAAA ACTATAAACA ATTGCTCGAC GCGCACAACA CGCTTGATAT GCACAACAAA
AATATCCGGC GAGAACACGA GATTGTAGAG AATGTGTTTC GCAACTCCCT CACACGCTCA
AATATAGAAT GCGACAATGT GGTGAGCTAC AGCTCGCCTA TGTCTATGTT TAACGGCGAT
CTTACGCTTA CCGCACCGTC TCCATCGGGT GGGCAATATT TTTTACTGGG GGATTTTACT
GGCCACGGTT TATCGGCGGC GATTGGTTCT CTACCTGTAA TGAATGTGTT TTTTGATAAT
GCGGCCAAAC AAGTAAGTGT TTCGGCGCTT GCAGTAGAAA TAAACAATCA ACTCTATCGC
ATATTACCTA TGGGCATGTT TTTTTGTGCT GCTATCGGTC ACCTAGACAA AACTGGCACG
CAACTGACGG TTTGGTCCGG CGGCATGAAC GACGCTCTTC TTCTCTCATC AGACAACAAA
TCGATTACAG CCATTCCCGG CGCGCATATG CCTTTAGGTA TATTGCGCCC AGAAGAATTT
GACGACAGAG CACAATTGCA CGAACTAGAA AAAAACGCAA AAATATTCTT CTACACAGAT
GGCGTTGACG AAGCTCAAAA TAAAGACGGC GAACTCTTTG GGGATGACCG TGTTCGTGAA
ACTATTCTAG CGAGTAATGA CAACTACATA ACAAATATTA TTTCAGCTGT TAAAGAGTTT
ACTGGCGATG AACACCAAGA TGATGACATT TCCATCATAA AAATTGTATG CGCACCGTGC
GTACATCGAA GTAAAAACAC AGGTAATATT GTCGACGTAG CGGCAGATTT CCACTCCATT
GACAGCTTCC CTTGGCAGCT ACTCATTTCA CTCGAAAGCA TCGATTTACA GCGCTCCGAC
ATTGTTAATC AAGTGGTCTC GTTTTTAGGT ACTATTCAGG GGGTGGAATT ACATCAAGAT
AAGTTATTCA CCATTGTTAG CGAGCTATTC AACAACTCGC TTGAGCATGG AGTGCTTAAT
TTAGATTCAT CCATTAAAAA TACTGCGGAA GGGTTTGAAG AGTACTATCG CATGCGCGAA
GAGCGCCTGC GCGAGATAAG CGACAAACAG ATTCATATTG CTCTGCGCTA TGTTCTGGGC
ACACCCAATA GAGTAGAGTT TGAAATTACC GATTCAGGTG AAGGGTTTGA TTACGAGACA
GTATTGATGC GGGGAGAAGA TACAAATGCA TTACACGGTA GAGGTATTGG CTTATTACAA
ACGTTGTGCT CGAAGCTAGA ATACAGCGAA GGCGGTAGAA AAGTAACCGC CCATTACGAC
TTTATAGAGT AG
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| Protein sequence | MKILVVDDHA YNRDLLQFIL EDEGHSCCEA DSGEAAVKMF LENEDIDLIL MDVNMPLMNG
IEATEKISEI KGPRAVTIIF VTALDDSDIL IQCLNAGGDD FVPKPVNESI LISKINAHAR
NIENYKQLLD AHNTLDMHNK NIRREHEIVE NVFRNSLTRS NIECDNVVSY SSPMSMFNGD
LTLTAPSPSG GQYFLLGDFT GHGLSAAIGS LPVMNVFFDN AAKQVSVSAL AVEINNQLYR
ILPMGMFFCA AIGHLDKTGT QLTVWSGGMN DALLLSSDNK SITAIPGAHM PLGILRPEEF
DDRAQLHELE KNAKIFFYTD GVDEAQNKDG ELFGDDRVRE TILASNDNYI TNIISAVKEF
TGDEHQDDDI SIIKIVCAPC VHRSKNTGNI VDVAADFHSI DSFPWQLLIS LESIDLQRSD
IVNQVVSFLG TIQGVELHQD KLFTIVSELF NNSLEHGVLN LDSSIKNTAE GFEEYYRMRE
ERLREISDKQ IHIALRYVLG TPNRVEFEIT DSGEGFDYET VLMRGEDTNA LHGRGIGLLQ
TLCSKLEYSE GGRKVTAHYD FIE
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