| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3096 |
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| Symbol | |
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| ID | 3965477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3951917 |
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| End bp | 3953113 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922193 |
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| Product | membrane-fusion protein |
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| Protein accession | YP_528565 |
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| Protein GI | 90022738 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.651787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTAA CCAAACAACA AATTTTTCGG CCTATAGCGG TTCTACTTGG TGGAGCTGCT
GTATTCACTC TGATTATGTT TACCAAATCG TCAGACGATA AACGCGAAGA AGAAAAACTT
GTACCTTATG TTTCAGTAGA AAAGGTAGAG CTAGCCCCCA TTCAGTTAGT CGCTCACTCG
CAGGGCGAGG TGCGTTCACG CTATCAAACC CGCATAGTTA GCGAGGTTAG TGGTAAGGTG
CAGGCTGTGT CTCCCGCGTT TGAAAATGGC GGTTTGGTTA AGAAAGGCGA GCTGCTTGCG
CAAATAGACC CGTTCGATTA CGAAGTAAAA GTGCAGCAAG CCAAAGCTAA CCTTGCCAGT
GCGCGCGCTG CGTTTATCCA AGAGCGCGCA CAGGGCCGGG TAGCCGAGGC CGAGTGGGCG
TCTATTACCA ACGCCGAGCC ATCTGAGTTG GGTTTGCGCA AACCACAGCA AGAGCAAGCA
TTGGCTTCTG TTAAAGCAGC AGAGGCGGCC TACACCCAAG CGCAAAAAGA TTTAGAGCGC
ACCCAAATAC TCGCCCCTTT CGATGCCCTA GTTAAAAGCC GCGATGTTAG CCCCGGTACG
TTTTTAAACA TAGGCGGCAC GCTGGGCGAG TTGTTAGATG TTTCCCTTGC AGAAGTACGT
TTACCTGTTA ATCAATCCGA TTTCTCTATT TTGCAAAATG CAGGTCGCAA TGCACAAGTA
GTGTTACGCG GCCATGTGTA TGGTCAAACG CAAACGTGGC AGGCACGCAT TGTGCGCGAC
GAAGGCATGG TAGATGCCGC AAGCCGTATG ATTTACCTCG TGGCACACAT TATCGATCCC
TACGCGCTTA ATAACGCTAC ACCCCGTTTA CCCTTTGGCA CCTATGTGTC GGCAGAAATT
CACGGCGAGC TATTACCGCA GGCATTAAAA ATTCCTCGCC GTATATTTAT TAACGGCGCA
ATCCCCGTTG TAGCAGATCA CAAATTAGAA TTGCGCGAGG TAACGGTACT AAAAGAAGAA
GGCAAGCACA GCATAGTATC TGCCGGGTTG GCCGACGGTG ATTTAATGGT GGTATCTACT
TTGGCCGCGC CCATTGCCGG TATGGAGCTA ACCTGGGAAG GCGCACCTAC CCCCAAAAGC
GAAGAGGCTA CAGAAAAGGC AATTGCGAGC GCCGCCGATG TAAAGGAGGT TAAATAA
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| Protein sequence | MSVTKQQIFR PIAVLLGGAA VFTLIMFTKS SDDKREEEKL VPYVSVEKVE LAPIQLVAHS
QGEVRSRYQT RIVSEVSGKV QAVSPAFENG GLVKKGELLA QIDPFDYEVK VQQAKANLAS
ARAAFIQERA QGRVAEAEWA SITNAEPSEL GLRKPQQEQA LASVKAAEAA YTQAQKDLER
TQILAPFDAL VKSRDVSPGT FLNIGGTLGE LLDVSLAEVR LPVNQSDFSI LQNAGRNAQV
VLRGHVYGQT QTWQARIVRD EGMVDAASRM IYLVAHIIDP YALNNATPRL PFGTYVSAEI
HGELLPQALK IPRRIFINGA IPVVADHKLE LREVTVLKEE GKHSIVSAGL ADGDLMVVST
LAAPIAGMEL TWEGAPTPKS EEATEKAIAS AADVKEVK
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