| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2997 |
|---|
| Symbol | |
|---|
| ID | 3967758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3818422 |
|---|
| End bp | 3820179 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637922094 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528466 |
|---|
| Protein GI | 90022639 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0217455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000181877 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTAAAAA AAGTGAGTGA ATTAAACCTA GTAAAAAGCG CTTTGCGTTT CGCGTTGGTT
GGCTTTGTTG CAAGCCTCGC GGCTTGCGGC GGGGGCAGCA GTTCGCCTTC GGCGCAAAAG
GCAAGCCAAG CAGGTAACCC AAGTGGTGGC CAGCAAAGCG GTGCCAGCAA CGTTAAGCTT
TTTACTGAGG TTTCCCAAAG CACCAATATA AGTTACTACC AAGGTTACAA AAATTCCGGC
TCGCTTTCCG ATGTGCAAAA ATTTTGCGGC GGTGTGGCCA GTGGGGATTT TAATAACGAT
GGTTTAACGG ACCTGTTTAT TGTGCGCGGG GATGTGGGGC CTCATTTGCT GTATAAAAAT
GAAGGCAACA ATCAATTCAC AGAAATGGCG GCAGAGGTAG GGCTAGCAAT TGCAGACCAA
ATGGGATGCG GCCCAACCTT TGCCGACGTG GACGGAGATG GCGACTTAGA CCTATTTATA
GGTGGTATTG AAGGGCACCG CAATTACTTA ATGCTTAACA GTATTAACGA AAACGGTGAA
CAGGTATTTA TTGATGCTAC TGAACAATGG GGCTTAAAAA ACCTCGCTGC CCAGCACACC
ATATCTTCAA GCTTTGGCGA CTACGACGGT GATGGTTGGT TAGATCTATT TGTTGCGCAT
TGGGGTACCC CTGCGCGCAT AGAAAAACAA CACTTGTTTC GCAATAACGC AGGTGCTGGT
TTTATCAACG TAACTGCTCA AGTGGGGTTG GCCTCAGAAA TAATTGCTAG GCCTACCAGT
AACGCCACAC TCGGTGAAAA TCACGATTAC AGCTTTTTAG GCGCATTTGC GGATATTAAT
AACGACGGTT ACACCGACTT GTTGATGGTG TCAGATTTTG GTACCAGTAA AGTCTTTATC
AACTCGGGTT CCGGTAGTTT TTACAACGCA AACGAAAGCG CAATAAAAGA TGAGAACGGA
ATGGGCAGTG CCGTTGGCGA TATAGACAAC GACGGCGATT TAGATTGGTT TGTTTCTGCT
ATTTTGACTT TCGATTCCCC TGGCAACCGT CTTTACCAAA ATCAAACCAA CGACATAGGC
GCATTACAGT TGTTTTCCGA TACCACCAAT ACCATGGGGG TGCAGGATGG CGGCTGGGGT
TGGGCAGCAT GCCTTGCCGA TTTCAACTTA GATGGGTACT TAGATATCTT TCACGTAAAT
GGTTGGGATG CAGCGCTTAT TGATTTGGAT TTTTCTAAAG ACCGCTCACG GTTATTTATT
AGCGAAGGTG CCACCAATCA AACAATTCGG TTTAACGAGG TAGCAAGAGA GAACGGTATT
ATTTCTACCA AGCATGGCCG AGGCGTGGTG TGTTTTGATG CAGATAACGA TGGCGATACA
GACCTATTTG TTTTAGGTGT GGGCGTAGAG CCATTTGAGT TTTACCAAAA CAACACATTT
GGCGGTTCAG CGAACCAACC GAACAATTAC CTCACTGTAA ACCTGCAAGG CCTAGCGCCG
AATACGCAAG CTGCGGGTGC GCGCATATTC GTGCGCACGC AAAACACAGA GCAAATGCGC
GAAATTCAAA TAGGCAGTAA TTTTATTTCG CAAAACCCTG TGCAGCAGGT GTTTGGCTTA
GGGCAAACAG ATGTGGTTAG CGAAGTGCTA ATAAAATGGC CAGATGGCAG AAGTCGTTCG
CTAATTAATG TGGCTGCAAA CCAAACAATT ACCGTTACTC ATCCGGATGT GAACACCAGA
AACGAATTTA AACAGTAA
|
|---|
| Protein sequence | MVKKVSELNL VKSALRFALV GFVASLAACG GGSSSPSAQK ASQAGNPSGG QQSGASNVKL
FTEVSQSTNI SYYQGYKNSG SLSDVQKFCG GVASGDFNND GLTDLFIVRG DVGPHLLYKN
EGNNQFTEMA AEVGLAIADQ MGCGPTFADV DGDGDLDLFI GGIEGHRNYL MLNSINENGE
QVFIDATEQW GLKNLAAQHT ISSSFGDYDG DGWLDLFVAH WGTPARIEKQ HLFRNNAGAG
FINVTAQVGL ASEIIARPTS NATLGENHDY SFLGAFADIN NDGYTDLLMV SDFGTSKVFI
NSGSGSFYNA NESAIKDENG MGSAVGDIDN DGDLDWFVSA ILTFDSPGNR LYQNQTNDIG
ALQLFSDTTN TMGVQDGGWG WAACLADFNL DGYLDIFHVN GWDAALIDLD FSKDRSRLFI
SEGATNQTIR FNEVARENGI ISTKHGRGVV CFDADNDGDT DLFVLGVGVE PFEFYQNNTF
GGSANQPNNY LTVNLQGLAP NTQAAGARIF VRTQNTEQMR EIQIGSNFIS QNPVQQVFGL
GQTDVVSEVL IKWPDGRSRS LINVAANQTI TVTHPDVNTR NEFKQ
|
|---|
| |