| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2934 |
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| Symbol | |
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| ID | 3968024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3724831 |
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| End bp | 3726690 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922031 |
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| Product | endo-1,4-beta-xylanase |
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| Protein accession | YP_528403 |
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| Protein GI | 90022576 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000972759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.881694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAGC TACGTCAATC TATCCACGGC GCCTTGGCGC GTACCGTGGG CATAATAAGT
ATAAGCACCG GACTTGTACT CGCAGCGCAA ACTGCAAGTG CAGCCTGTGA ATACACCGTA
ACCAATTCGT GGGGTTCGGG TTTTACCGCG AGTATTCGCA TAACAAACGA TACCGGTAGC
GCAGTAAACG GTTGGGCGGT TAACTGGCAA TACGCTAATG GCAACCGTGT AACAAATTCA
TGGAACGCTA CGCTGTCTGG CAATAACCCT TATAGCGCCA GCAATATTGG TTGGAACGGC
GGTATTCAAC CTGGGCAGTC GGTGGAATTT GGTTTTCAAG GCACGGCTAA TGGCGCGGCA
GAAACACCAG CGGTAACGGG GGCTGTATGT GCTACAGGGT CTAGCTCTTC CAGCTCAAGC
TCTAGTTCTT CGTCTAGCAG CTCTAGTTCT AGCAGCAGTT CGAGTTCATC GAGTAGCTCG
TCTAGCACTT CAAGCTCGTC ATCTAGCAGC TCTTCCAGTT CATCGGGCGC AAACTGTGTA
GAAATGTGTA AGTGGTATCA AGATGCGCCT CGCCCTTTAT GCAATAACCA AAATAGTGGT
TGGGGTTGGG AAAACAACCA AAGTTGTATC GGCCGAGCAA CGTGCGAATC GCAACCGTCT
AATGCGGGTG GGGTGGTAAA TAGTTGTCCG TCTAGTTCTA GCAGCTCTTC AAGTTCCTCT
AGTTCGAGCT CGTCTAGCAG TTCAAGCTCG TCTAGCAGTT CAAGCTCGTC TACTAGTTCT
AGTTCATCAA GCACAAGTTC TACTTCTTCA AGTAGTTCTA GCTCTAGCGG TTCTGCTGCA
AACTTATATA CCTTGGCAGA TTTCCCCATT GGCGTTGCTG TAACTGCGGG TAATGAGAGC
CGTAGCTTTT TATCTATTGC TGCGAAAGAG GCAACTGTTA AAAAACACTT CGACCAAATT
ACAGCCGGTA ACATTATGAA GATGAGTTAC TTGCACCCAT CCGAAAATAG CTACACCTTT
AGTCAAGCGG ATGCCATGGT TAACTGGGCA AATAGCAACG GCGTAAGTGT GCACGGCCAT
ACTTTTATTT GGCATTCCGA TTACCAAGTA CCAAATTGGA TGAATAATTA CAGCGGTAAT
TTTGCGTCTA TGATGGATAC CCACGTAACC ACTATTGCCG ATCATTTTGA AGGCCGAGTA
GTAAGCTGGG ATGTGGTAAA CGAAGCTATC GATGAGAGCC AATCTAGTTG TTATCGCAAC
TCTTTGTTTT ACCAGCGTTT AGGTAAAGCT TATATTGCCA ATGCGTTCCG CGCGGCCCGA
GCAGCAGACC CTAGCGTAGA GTTGTATTAC AACGATTACG ATACCGAAGG TGGCAATGCC
AATAAGTTAA ATTGCTTGTT GCAATTAGTC GATGACTTGC AAGCGAACAA TGTGCCTATC
GATGGTGTGG GCTTTCAAAT GCACGTGCAA ATTGATTGGC CCAGCACCAG CAATATTGCT
GCGGCTTTCC AAGCTATTGT GGATCGCGGC TTAAAGGTAA AAATTACTGA GCTGGATGTG
CCTATTAATA ACCCTTATGG CAGTGGTTCA TTCCCGCAAT ATTCAACTTA CACGTCACAA
GCCGCTGCGT TGCAAAAGGC GCGTTATAAA TCCATTGTAA AAACCTACTT GACTGTTGTG
CCAGCGCATT TGCGCGGGGG CTTAACCGTA TGGGGTATAT GGGATGGTGA TAGCTGGTTG
TTAGATTTTG ATAATCGTCA AGGCGCTGAT GATTGGCCGC TATTATTTAG TGGCCCAGCT
AATGGCCCCT ATGTAGAAAA AGAAGCATTC TATGGCGTGG CAGAGGCGCT TACAGAATAG
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| Protein sequence | MIKLRQSIHG ALARTVGIIS ISTGLVLAAQ TASAACEYTV TNSWGSGFTA SIRITNDTGS
AVNGWAVNWQ YANGNRVTNS WNATLSGNNP YSASNIGWNG GIQPGQSVEF GFQGTANGAA
ETPAVTGAVC ATGSSSSSSS SSSSSSSSSS SSSSSSSSSS SSTSSSSSSS SSSSSGANCV
EMCKWYQDAP RPLCNNQNSG WGWENNQSCI GRATCESQPS NAGGVVNSCP SSSSSSSSSS
SSSSSSSSSS SSSSSSSTSS SSSSTSSTSS SSSSSSGSAA NLYTLADFPI GVAVTAGNES
RSFLSIAAKE ATVKKHFDQI TAGNIMKMSY LHPSENSYTF SQADAMVNWA NSNGVSVHGH
TFIWHSDYQV PNWMNNYSGN FASMMDTHVT TIADHFEGRV VSWDVVNEAI DESQSSCYRN
SLFYQRLGKA YIANAFRAAR AADPSVELYY NDYDTEGGNA NKLNCLLQLV DDLQANNVPI
DGVGFQMHVQ IDWPSTSNIA AAFQAIVDRG LKVKITELDV PINNPYGSGS FPQYSTYTSQ
AAALQKARYK SIVKTYLTVV PAHLRGGLTV WGIWDGDSWL LDFDNRQGAD DWPLLFSGPA
NGPYVEKEAF YGVAEALTE
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