| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2896 |
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| Symbol | |
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| ID | 3968064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3672207 |
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| End bp | 3673538 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921993 |
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| Product | cellulose binding, type IV |
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| Protein accession | YP_528365 |
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| Protein GI | 90022538 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00808862 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAATC TAACCCCCAA ACGGCTACTT ATTTCTCGGC TGGAGCTTCT TTTAGGCCTG
CTGGCGCTGG CCTCGGTGGC GGCGTTGTTC GTACCTGCCG ATTGGCTAAC ACGCGACTAC
AATTTGCCTA TAACAGCGCT TAAAGCAGAT ATTTACAGCG ATCAAGCTAT AGGTGGCCAA
AGCAACGTTG AGTGGATAAA TGAAGAAGCG CGCGCGTGGC AGTGCACACT CAAACCCGGC
TTTGCGGACC CTTTTTGCAG CTTTTTAATC CATTTAGTGG GTAAAGAAGG TAAAGGATTG
GATTTGAGTA AATACACTAA TATGACGGTT CACATTAAAT ACACTGGCCC ACCAAAAGGC
TTAAGAATAT ATTTGCGCAA CCGCAGCCCC AATTACTATG TATTGGGTAA CCTAAACAGC
ACCAAGTACA ACACTGTTGA ACTAACTAAC GCCGAACTAA ACAAAATTAC GCGCTTTAAA
CTTGCCGATT TCGGCGTGGC CGATTGGTGG CTGGCTAGCC ACTCCGTACC AGTCGAGTTT
TCACAACCAG AATTTAATGA TGTAGTACTA TTTGAAATAC AAACGGGTAC TAGCCTAAAA
GATGGAACCT ACAACATAGA GCTAACGGAA GTAAGTTGGA GCGGCCCAAT TGTTAGCCAA
GAAGTTTTGT ACCGAGCTAT CGTTATTCTG TGGGCTGCGG TTGTGTTTAG TTTACTGATA
TATCGACAAG TTAGATTAAA CATTCAGTTA AAACAAAAAG CCCAGCAGCA GGAAGAGCTG
ATCAATATAA ATAAACTGCT AAATCTGCAA ACTCAAAAAT TCGAAGAGCT GGCTAAAACA
GACATGCTAA CCGGCGTCGC GAATCGATTA GGGGTTAGAG AATACTTGTT TGAAGGGTTG
AACAATTGGC GCAACAACCA ATCACCTTTT TCGTTAATAC TTATCGATAT AGATCACTTT
AAACTGTTTA ACGATACCCA CGGCCACGAT GTAGGTGACA AAGTACTTAA GGGCGCTGCG
GAAATATTCC GTAACAGTGT TCGCAATACC GATTTAGTGG CCCGCTGGGG AGGCGAAGAA
TTTATTGTTA TTTGCCCAAA CACAGATACA CATCAGGCAA CGACCGTGGC TGAGAACCTA
AGAACCAGGC TCGCCAGCGC AGAGATATTT AATGGTTTAA AAGTAACGGC AAGCTTTGGC
GTTGCCAGCA TGAATACCCC AAGCCTAGAG CATTTATTTA AACAAGCCGA CGAAGCACTT
TACAGCGCAA AAGAGGCGGG CAGAAATAAA GTTGTAGTCT CTTCAACCTT AGCGAACCTG
CCTAGCCTAT AA
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| Protein sequence | MTNLTPKRLL ISRLELLLGL LALASVAALF VPADWLTRDY NLPITALKAD IYSDQAIGGQ
SNVEWINEEA RAWQCTLKPG FADPFCSFLI HLVGKEGKGL DLSKYTNMTV HIKYTGPPKG
LRIYLRNRSP NYYVLGNLNS TKYNTVELTN AELNKITRFK LADFGVADWW LASHSVPVEF
SQPEFNDVVL FEIQTGTSLK DGTYNIELTE VSWSGPIVSQ EVLYRAIVIL WAAVVFSLLI
YRQVRLNIQL KQKAQQQEEL ININKLLNLQ TQKFEELAKT DMLTGVANRL GVREYLFEGL
NNWRNNQSPF SLILIDIDHF KLFNDTHGHD VGDKVLKGAA EIFRNSVRNT DLVARWGGEE
FIVICPNTDT HQATTVAENL RTRLASAEIF NGLKVTASFG VASMNTPSLE HLFKQADEAL
YSAKEAGRNK VVVSSTLANL PSL
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