| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2882 |
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| Symbol | |
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| ID | 3968108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3651394 |
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| End bp | 3653736 |
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| Gene Length | 2343 bp |
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| Protein Length | 780 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921979 |
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| Product | TonB-dependent receptor protein |
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| Protein accession | YP_528351 |
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| Protein GI | 90022524 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00344491 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00617905 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCCAAC TAGCCAATAC GCCTGCAAGC AAAAACCTCA AACTATCCGT ATTAACGGCA
GCCATATTAA TTAGCAACTC CGCACTGGCC GAACACAACA ATAATCAGCT AGACAAGAAA
AATGTTGAAG AGGTGAAAGT GTGGGGCGAA AGCAAGGCGA GTGATCAAGC CGATTTTACC
ACCCCCAATA GCGTGCTCAC CCGTGAAGAC TTTCAAAGCA TAAATATTGC AACCACAGAA
GATGTGGTTA AATTTGAGCC GAGTATTGTT ATTCGTCGCC GTTTTATTGG CGACTCCAAT
GGCACTATGG GTATACGCGG TTCCAATATG TTTCAAACTT CGCGCTCCAT GGTTTTTGCC
GATGGTGTGC CACTGCACTA CCACTTGCAA TCTCGCTGGA GTGGCGCGCC TCGCTGGACC
ATGGTTTCCG CCAGTGAAAT TGCCCAAGTA GAAGTGCTGT ACGGCCCTTA CTCTGCAGAA
TACAGTGGCA ATGCAATGGG CGGTGTAGTT GTTATAGAAA CAGCCATACC GCAACAGCGT
GAATTCCATT TTGATGGAGC CTTTTTTACC CAGGATTTTA ACGCCTACAA ATTCGACGAT
AGCGTAAATG GCTTTAAAGG CTTTATATCG GCAGCCGATA AAATTGGTGA CCTAAGCCTT
TATGCTTCTT ACAACCACTT AAATAACGAT GCACAACCAC AATCGTTTTA CTACAACACA
CCAACCGAAA CAGACAATCC CAATACCGCA ACCGGCGCAT ATGCGGGCAA AAGCAGCACC
GGTGACGACG TGCTGTACTT TAGTGATTCG GGCGTAGTAA ATACCCAAAC CGACAACCTA
AAATTTAAAG TAGGTTACGA CTTTGGCCAC TGGCAAACCC TACTTAATAT TGCCTACGAA
GACAGACAGT CTAGCTCCGA TAGCCCCACC CCCTTTTTAG AAGATTTAAA CGGCAATAAA
ATTTGGGGGG GTAATGTTGT AGTTGATGGG CAAAACCTTA CCATTCCCGC TAGTCGCTTA
GCCGTAAGTG ATATGGACAG AAGGAGCCTC TCGGTAGGCT TGCGCTTAAA AGGCGATTTA
AATAGCAATA CATCATTAGA AGCAAACCTT AACCAGTTTT CTATTTTAGA AGATCAAAAT
AGAAGCTCTA GCGTTAACCC TAATCACCCC AGCTACACCT TAGATGGGCA AGTGTCTGAT
TATGACGATA CGGGCTGGAC AACTGCCGAA GCAAAATTAC GCTTTAGCCA GCTAGGCAAC
ACACACCTTG CCTTAGTAAC CGGCGTACGC CACGAAAGCT ACCAGTTAAA TTACAGCGTA
TACGACTCGA GCAACTACGC CGCAGGCAGT AAAGATACCC TCACAAATAC AAGCGGAGGC
GAAACAAGCA TTAATGCCGC GTTTGCGCAG TTTAGTTGGG ACATTAACAG CCAATGGGAT
ATGGCTTTTG GCGCTCGCTT CGAAAGCTGG AAAAGCAGCA ACGGCTATAT TTCTGAAGAA
AACACCACCA CAGGCAATGT AGAAAAAGCC CCCGTACCAG AAATATCTGC AGAGAAATTA
TCGCCCAAGT TATCTGTTGG TTTTAGCCCA AATAGCGATT GGCAGCTGCG CTATTCGCTG
GCAAGAGCTT ATCGTTTTCC AATTGTGGAA GAGCTATTTA GCCAGTACCA AGCCTACAAT
GCCATTAGCC TAGCCAACCC AGAACTGAAG CCCGAAGACG GCATACACCA AAACATTATG
ATTGAGCGCA GCCTCAATAA TGGCTATGCC CGCATTAATG TTTTTACAGA AACCATCGAA
GATGCAATAG ACTCGCAAAC CACACTCTTG CCAGGCGGAG GCTCAGTGCG AACCTTCTCG
CCGGTAGACG AAACCAAAGC GCAAGGTGTG GAATTTATTG TAAACCAGTA CGACTTCTTG
ATTAGCGATT TAGATATGCG CTTTAATTGG GCCTATATTG ACACCGAAGT TATAAGTAAC
AGCACCGCTG AAGGCGACGA TATTAGCCCA GAGAATTCAA TTGTTGGTAA CGAGCTACCG
CGCATGCCAC ACTGGCGCGG CAACCTGATG GCAAGCTATG CACTTACAGA AAAGTGGACC
ACCAGCGTAA ACCTACAATA CGCGAGCGAT GCCTATGGCC GCACCGACAA TACAGATACC
GAACGCAACG TATACGGCGC GCAAGATGGC TACACGCGCA TAGGCCTTAA AACACATTAC
GCGCTAAACA AAACGCTAAA GCTAGGCATT GGTATAGACA ACCTTACCAA CGAAATAGCC
TATGTAGCAC ACCCTTGGCC GGGCAGAACG GTATATTTTA CTTTGGCGTA TGACTTAAAA
TAA
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| Protein sequence | MLQLANTPAS KNLKLSVLTA AILISNSALA EHNNNQLDKK NVEEVKVWGE SKASDQADFT
TPNSVLTRED FQSINIATTE DVVKFEPSIV IRRRFIGDSN GTMGIRGSNM FQTSRSMVFA
DGVPLHYHLQ SRWSGAPRWT MVSASEIAQV EVLYGPYSAE YSGNAMGGVV VIETAIPQQR
EFHFDGAFFT QDFNAYKFDD SVNGFKGFIS AADKIGDLSL YASYNHLNND AQPQSFYYNT
PTETDNPNTA TGAYAGKSST GDDVLYFSDS GVVNTQTDNL KFKVGYDFGH WQTLLNIAYE
DRQSSSDSPT PFLEDLNGNK IWGGNVVVDG QNLTIPASRL AVSDMDRRSL SVGLRLKGDL
NSNTSLEANL NQFSILEDQN RSSSVNPNHP SYTLDGQVSD YDDTGWTTAE AKLRFSQLGN
THLALVTGVR HESYQLNYSV YDSSNYAAGS KDTLTNTSGG ETSINAAFAQ FSWDINSQWD
MAFGARFESW KSSNGYISEE NTTTGNVEKA PVPEISAEKL SPKLSVGFSP NSDWQLRYSL
ARAYRFPIVE ELFSQYQAYN AISLANPELK PEDGIHQNIM IERSLNNGYA RINVFTETIE
DAIDSQTTLL PGGGSVRTFS PVDETKAQGV EFIVNQYDFL ISDLDMRFNW AYIDTEVISN
STAEGDDISP ENSIVGNELP RMPHWRGNLM ASYALTEKWT TSVNLQYASD AYGRTDNTDT
ERNVYGAQDG YTRIGLKTHY ALNKTLKLGI GIDNLTNEIA YVAHPWPGRT VYFTLAYDLK
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