| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2875 |
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| Symbol | |
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| ID | 3968101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3642567 |
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| End bp | 3643436 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637921972 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_528344 |
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| Protein GI | 90022517 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00412762 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAAATG TTCTTTGGTT ACGTAGTTTT TGTACGCTTG TGGAAGTAGG GCATTTCACC
CGCACTGCAG AGCGCCTAAA TATGACGCAA TCGGGCGTGA GTCAGCATGT GCGCAAGCTG
GAGGAGCAGC TTGGTGTGCC TTTGTTGGTG CGGCATGGCA AGCAATTTAG CTTATCGTCG
GCAGGCGAAA AGCTATACGC CGGCGCGCAA GATATTATGC AGGCGCTGGT AAGCTTGGAG
CGGAATGTAG GTGAAGACCC GCCTTTTGAA GGGCTGGTAC GGGTAATTTC GCCTGGCAGT
GTGGGGCTTA AGCTATACCC ACACTTACTG GCGCTACAAA AAACGCACCC CAAGCTGATT
ATCGACTACC GCTTTGCCCC AAATGCAGAT GTTGAAGCCG CAATAACCAA TGCGACGGCA
GATATTGGTT TCATGACATC CAAATCGAGT GCGGCCGATG TGCGTTGCGC ACCTATAGCC
GAAGAGAGTT TGTTACTGGT TACACCCAAG ACTGCAACAG AGCCCGACTG GCATACATTA
ATGGGGTTGG GGTTTATTGA TCACCCAGAT GGAGCGCATC ACGCGAACTT GTTACTAGGC
GCTAATTTCC CTGAGTTTGC TCATGTTAAC CAATTCCCTA AAAAGGGCTT CTCTAATCAA
ATAGGCTTAA TCTTAGAGCC GGTAAGTATG GGCTTGGGCT TTACCGTGCT GCCCGCACAT
GCGGTAGAGG CATTTGCTAA GCCCGAATTA ATTAGCGTGC ACTCGCTGGT TAACACGGCA
AAAGAAACGT TGTACCTGTG TGGTCTTCGC CACCGATCGT TTCGCCAACG CATGGAAACC
GTAATTGCTG AAGCTAAAAA TTGGCTTTAA
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| Protein sequence | MINVLWLRSF CTLVEVGHFT RTAERLNMTQ SGVSQHVRKL EEQLGVPLLV RHGKQFSLSS
AGEKLYAGAQ DIMQALVSLE RNVGEDPPFE GLVRVISPGS VGLKLYPHLL ALQKTHPKLI
IDYRFAPNAD VEAAITNATA DIGFMTSKSS AADVRCAPIA EESLLLVTPK TATEPDWHTL
MGLGFIDHPD GAHHANLLLG ANFPEFAHVN QFPKKGFSNQ IGLILEPVSM GLGFTVLPAH
AVEAFAKPEL ISVHSLVNTA KETLYLCGLR HRSFRQRMET VIAEAKNWL
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