Gene Sde_2842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2842 
Symbol 
ID3968186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3591589 
End bp3592542 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content45% 
IMG OID637921939 
ProductATP-binding protein of ABC transporter 
Protein accessionYP_528311 
Protein GI90022484 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0000492349 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.269335 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGATG TTACCCAGTT AACTCGACGC TATGGCGATT TCAAAGCGGT AGATAACGTA 
AGCTTTACTA TTAAAACTGG CGAGATTGTT GGTTTGCTCG GCCATAACGG CGCAGGTAAA
ACAACAATCA TGAAAATGAT AAGCGGTTAC CTAGAGCCCT CTAATGGCTC GGTAAGCTTA
GATGATGTTT CGCTAGAGGA CGACGCGAAA CTTGTGCAGC AGGGGCTTGG TTACCTACCA
GAAAGCCTAC CCGTATACCC CGAAATGAGC GTGGCAGATT ACTTAAACTA CGCTGCAGGT
TTAAAAGGGC TAGAGGGTGA AATAAAAAAC GCGGAGATAA AACGCGTTAT ACAAGCTACC
GATATATCTG AAAAATTACT TGCTCCCATA GCGACGTTAT CGCGCGGTTA CAAGCAGCGG
GTGGGGGTGG CGCAGGCCAT TCTCGGTAAG CCCAAGTTGC TAATTCTAGA TGAACCAACT
AATGGTTTAG ACCCCGAGCA AACCTTGCTA ATGCGCAAAC TTATTAAAGA TATCGCGCAG
GATGCAACCG TTATTCTTTC TACCCATATT ATGCAAGAGG TAGAAGCTAT CTGTTCGCGT
GTACTTATGT TGCGTGCAGG GCAGCTGGCT GTGGATGAAT TACTCGAAAA TCTAAAACGC
AGTAACTCAT TACTGCTACA TACGTCGTTG CCTTCCGATC AATCTACGTT GCTTACCCAG
CTTACGGGGA TAGCGAGTGT GTCTGCATTA CCCAGCGAAA GCAGCAATGC CATTTACTGC
ATAGAAATAG AAAAAAATGC CGAGCTAGAT AGCGTGGCCG CGTTAGTGGC CGAAACCATT
GTGCAAGCAA AGCACAAGCT CATTCAATTA AAACCCGAAA TACGTGACCT AGAATCGCTA
TTTAAAGAAG TTAATCAAAC GAGTTCGTTA GGAGGTATAA GCCATGCAGC CTAA
 
Protein sequence
MLDVTQLTRR YGDFKAVDNV SFTIKTGEIV GLLGHNGAGK TTIMKMISGY LEPSNGSVSL 
DDVSLEDDAK LVQQGLGYLP ESLPVYPEMS VADYLNYAAG LKGLEGEIKN AEIKRVIQAT
DISEKLLAPI ATLSRGYKQR VGVAQAILGK PKLLILDEPT NGLDPEQTLL MRKLIKDIAQ
DATVILSTHI MQEVEAICSR VLMLRAGQLA VDELLENLKR SNSLLLHTSL PSDQSTLLTQ
LTGIASVSAL PSESSNAIYC IEIEKNAELD SVAALVAETI VQAKHKLIQL KPEIRDLESL
FKEVNQTSSL GGISHAA