| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2831 |
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| Symbol | |
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| ID | 3968175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3570705 |
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| End bp | 3573758 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637921928 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_528300 |
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| Protein GI | 90022473 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.312768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00196838 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATAAGC AATCATTCAA ACATAAATTA CTGGCTGTAA GTATTGCTAC AGCAGTAGCT
GCAAGTGCCA ATGCACAAGA GCAGCAAACA CAAGCAGAAG ATAATCAAGA AAATGCACTT
GAAGAAGTAA TCGTTACGGG TATTCGCGCA AGCTTACAGC GCAGCATGGA TATGAAACGC
GATGCCAAAG GTGTTGTGGA TGGCATCTCC GCAGAAGATA TGGGTAAATT CCCCGATACA
AACCTCGCTG AATCGTTACA ACGTATTACG GGTGTTGCGA TTGACCGTGA GCGTGGTGAG
GGTTCTAAAA TTACGGTGCG CGGTTTTGGA CCAGATTTTA ACATTGTTAC TTTTAATGAT
CGGCAAATGC CTACTAACGG GGGTAGGTCG TTCGATTTTG CGAACATTGC TTCAGAAGGT
ATTTCGGCGG TAGAGGTTTA TAAGTCTGGT CGCGCAAATG TTGCTACTGG TGGTATTGGT
GCAACAGTAA ACGTAAAAAC AGCTAAGCCA TTGGACAAGC CCGGTTTTCA AGCTGTAATT
AGCGGTAAGG GTGTGCATGA CCCGAGCAAC AGAGATGGGG CATCTGTAAC GCCTGAAATA
TCAGGCATTT TTAGTAATAC TTTTGCAGAC GACACCTTCG GTATTTCTTT GGCTGCAAGT
TATCAAGATC GAGAAGGTGG ATCTCAGTCT GCAACCACGC AGGATTTTTA CAGCCGTAAC
TTGGTTACGC AAGAGCAAAT TGATAACGGT GAAGGAGATA GTGGTGCGAT AGCGGTTGGC
GATCCAACAG CTATTGGATT CCCTTCTGAA GTTGGTGAGG GTGGCATTTA TGCAATTCCT
ACTAACATTC AATACAACCT TGATGAGTTT AAGCGCGAGC GCACAAATGC CCAGCTAACC
ATGCAATGGC GCCCAATTGA TACTGTTACA GCAACAGTGG ATTACACCTA TGCAGAAAAT
GCCATATCGA CCGAGCATAC AGATTTATCC GCATGGATTG ACCCTGGCTG TCAAACTAGA
GAGTCCGAAT GGGTGCAGGA AGGGCGTATC TGGTCTCCAA CTACTTATCG TCATGTAGGG
TGTGCTACTG ATAGTTTACA AGGCGTTGGT AAGTTTGCGA TTTTGAACGA GAACAATTCT
ATTGGCCTAA ATATTAAGTG GGACGCGACA GAAAAATTAA GCTTTTCTTT GGATTATCAC
GACTCAAGCG GTGAAAACAG CCCTAATAGT AAGTACGGTT CAAATAGCGT AGTTGCTGTT
GCGTCTAACA ACCGAATTAC AACTAGCGGT TATTTCTCTG CAGACGGTAT GCCAATACTG
GATGTTGAAC TAGGTGAGCG TAACGACTAC GGTCAAATTA TTCGTGTAGA TGAAAAAGAC
CCGAACGATG TACGAATTAC CGGTAGTATA TTTGGCACTG CAGTTTCTCG AATGGATGTT
AAGCAGCTAC AAATACAGGG TGATTTTGAA TTCGATGGCG GACATACCAT CGATTTTGGT
GTGGCTACAA TGGAAGTTAA AAACCGCAGC CAATATACCG ATATTCAGCG TAACAATTGG
AGCGGCGTCG GTGAGCCAGG TGATATAGCC GATCTATTAA GTTTCGAATC TATTGACGGT
GTGTTTGATA GCTTGAATGG TGGCGGCGAC CCACGACAAG AAACGTTACT TTATTCTTGG
GACTTCGATG CTCTTATTGA AAGAGGTGAA GATCTGTTAA TTTCTGGAGA CCACACAACA
AACCCTTCTA AGGGTGGGGG ACCGTGCGGT ACCGGTTATT GCCCAACCTA TAATTTTAAT
TCTGATGAGT TGACCACCGA AACCTCTAGT TCGGTTTATG TGCAAGGCCA TTATTTAGGT
GAAGCGTTTA ATCGTGATTA CAACGTATAT GCTGGTTTAC GGTATGAGTA CACCGAAGTG
AATTCCGAAG CTCTTTCCCC TGTTGTAGGC GGGGTTGGTT GGGATGTTTC GTCTAACACA
TTCCTCTACG GTTATTTAAA AGATGAAAAC GGCGATGACC TGCAGGAATT TACTGAGTTA
ACAGGTGATT ACGATGTCTT ATTGCCTAGC ATTGATTTTG ATATTGAATT AATAGACGAT
TTAATTTTGC GCGCTTCTTA TAGCAAAACA ATTACTCGTC CTACCTATGG TGCCTTAAAG
GGGCAGTTAA ATATTTGGTC GATAGGTAAA GAAGATAGTA CAGCCGGTAG TGGTAACCCA
CAATTGTTAC CTATGGAGTC CGATAACTTA GACCTTTCTA TAGAGTGGTA CTACGGTGAG
GCCAGCTACG CATCTGCTGG TATTTGGTCT AAAAATGTTA CTAACTTTAT AGCGAATGGC
ACGTTTGAAG ATATTCTACT ATATGAGAAT GTTACTACAC CTTATGGTGG AGCCTTGTAT
CAAGAAGCGA TAGAGGCCAT TACAGGTGGC GATTCAAGCG TTACTTTTGA TGACGACGAC
ATTAATACCT ATTTCATTGA AAACTACGCG AATGGGAATA ACCCATATGT AATTATCACT
GGTGAAGGCG AAGATGCCAC TGTGCAGCTA GATGGCGCAC CCGGGGACCC TGCTATTTAC
TTTGACGTAA GTAAACCAGT CAATCAACGC AAAACCAGCG TGAATGGTAT GGAGTTTATG
GTGCAGCATA CCTTTGGCGA AACGGGTTTC GGCTTACAGG CGAACTACAC TATTGTAGAT
GGCGATTTAG ATTACGACCT TAACCTTAAT GAAGAGCAGT GGGTTGTGCC CGGAATGAGC
GATACCGCTA ACCTTGTGGG CTTTTATGAT AAAAATGGCT TAGAAATCCG TTTGGCTTAT
AACTGGCGTG ATCAGTTCTT AGTTGACCCA GGTAAAGATC CAAAGTTTGT TGAAGAGTAT
TTTCAGTTAG ACCTGAATGT TAGCTACGAA ATTAACGACA ATGTGTCTGT ATTCGTAGAG
GGTATTAACA TCACCGAAGA AAATAAACGT GTACACGGTC GTTCAAGCTA TCAAGTACGT
GAATACGCTG TAGGTCACGC CCGCTATAAC CTAGGCGCTC GTTACGTCTT TTAA
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| Protein sequence | MYKQSFKHKL LAVSIATAVA ASANAQEQQT QAEDNQENAL EEVIVTGIRA SLQRSMDMKR
DAKGVVDGIS AEDMGKFPDT NLAESLQRIT GVAIDRERGE GSKITVRGFG PDFNIVTFND
RQMPTNGGRS FDFANIASEG ISAVEVYKSG RANVATGGIG ATVNVKTAKP LDKPGFQAVI
SGKGVHDPSN RDGASVTPEI SGIFSNTFAD DTFGISLAAS YQDREGGSQS ATTQDFYSRN
LVTQEQIDNG EGDSGAIAVG DPTAIGFPSE VGEGGIYAIP TNIQYNLDEF KRERTNAQLT
MQWRPIDTVT ATVDYTYAEN AISTEHTDLS AWIDPGCQTR ESEWVQEGRI WSPTTYRHVG
CATDSLQGVG KFAILNENNS IGLNIKWDAT EKLSFSLDYH DSSGENSPNS KYGSNSVVAV
ASNNRITTSG YFSADGMPIL DVELGERNDY GQIIRVDEKD PNDVRITGSI FGTAVSRMDV
KQLQIQGDFE FDGGHTIDFG VATMEVKNRS QYTDIQRNNW SGVGEPGDIA DLLSFESIDG
VFDSLNGGGD PRQETLLYSW DFDALIERGE DLLISGDHTT NPSKGGGPCG TGYCPTYNFN
SDELTTETSS SVYVQGHYLG EAFNRDYNVY AGLRYEYTEV NSEALSPVVG GVGWDVSSNT
FLYGYLKDEN GDDLQEFTEL TGDYDVLLPS IDFDIELIDD LILRASYSKT ITRPTYGALK
GQLNIWSIGK EDSTAGSGNP QLLPMESDNL DLSIEWYYGE ASYASAGIWS KNVTNFIANG
TFEDILLYEN VTTPYGGALY QEAIEAITGG DSSVTFDDDD INTYFIENYA NGNNPYVIIT
GEGEDATVQL DGAPGDPAIY FDVSKPVNQR KTSVNGMEFM VQHTFGETGF GLQANYTIVD
GDLDYDLNLN EEQWVVPGMS DTANLVGFYD KNGLEIRLAY NWRDQFLVDP GKDPKFVEEY
FQLDLNVSYE INDNVSVFVE GINITEENKR VHGRSSYQVR EYAVGHARYN LGARYVF
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