| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2819 |
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| Symbol | |
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| ID | 3968222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3556071 |
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| End bp | 3557486 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921916 |
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| Product | hypothetical protein |
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| Protein accession | YP_528288 |
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| Protein GI | 90022461 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.70664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000273831 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAATT ATATCACCCC AAAGCTATTA CTTTTGAAGT TAGTACATAG CAAAGCCTAT
GCAGCTATAA TGGTTAGCGC TTGTCTGTAC GCCCAGTCAA ATAGCGCCCA CGCAGAATTA
CACATTAAGC TACAACAACC CACGTGGGAG TTTTTACTGC ACAACCAACC ACAACCCACA
ACACAGCTAT CTACCCAAGC ACAACTGGCT AGTAGTGAAA GTCACTTCGC TAGTAAAATT
CAGCCTTTAC TGGCCGCACA AAAATACGAT GCAGTATTAA AAGCCTTTAA CCAACGCGAC
ATAAAAAATG ACAGCGCAGC TTTACGGCAA CTGCGCGGGC AAATACTGCT TAGCATGCAG
CGCACAAAAG AAGCCGAGCA AGCACTACTT GCCGCTATTG AGCTAATGCC AAACCTAGCA
CTTGCGCATC GCAGTTTAAG CATGGTGTAT ATGGTAGAAA AAAACTACGC CGCCGCAAGC
AAACACCTGC GTAAAACCAT CGAGTTAGGT GTAGCCGATG CCCAAGTGTA CGGGCAACTC
GCTTACGTTA ATTTACAGCA AGGACAAGCG GCCAGCGCCG TAGCGGGCTA CCAATATGCG
CTCTTACTAG ACAGCGATAA TCAACAATGG CAGCAAGGGC TACTCTATGC ACTTATAAAC
AGCCAGGCAT TCGATCAAGC GCAAGCCTTA CTTGAAGGCA TGTTGCAAGC CAACCCGAAA
GACACCAACC TGTGGCTGCA GCGCGGGCAA ATTGCACTTA AGCAGCAGCG TCCACAACAG
GCACTTAGCA GCTTGGAAAC AGCCCTAGTA CTGGGTGAAA ACAACGCAGA TAATATTGCT
ACCCTTGCGC AACTCCATAT ACAAAGTGGC AGCGCAAATA GAGCGGTAAC TCTACTGGCA
AACAACATTA CCAAAATGGT AGCCAACAAC AATAAAATTG AAGTTATAGA CCAAGTATGC
GCTTGGCTTG CCTACCAGCA GCAATGGCAG CAACTTGCAA ACCTTACCCA AGCCCTGCAA
AAAAACACCA ATAACATACC TGCCCATTAC CGTTCGCGCT TTGCGGTTTA CGCCGCGCAA
GTTGCACAAA GCAACGGTAA AACCAAGCAC GCCACCAAAC TGCTAGAAGA GGCAGTTAAC
AACGACCCAA GTAATGGCGA AGCCTTATTA ACACTGGCAA ATATTTTACG CAGCCAACAG
CGTACGCAAC GCGCCAACCT TTATTACATT CGCGCAGAAG CCCTAGCCGA TTACAAAGAG
CGTGCTTTAT TAGGTCGCGC TCAGCTAGAA ATTGACGCAA ACAATTACCC GGAGGCGCTG
CGTTTGCTGC GCTTGGTAGC TCAATTAAAC CCAGCCCGCA CGGATGTATT GGCGAATATT
CAATCCCTAG AAAATCTAGT ACGTAATCGG AGTTAA
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| Protein sequence | MKNYITPKLL LLKLVHSKAY AAIMVSACLY AQSNSAHAEL HIKLQQPTWE FLLHNQPQPT
TQLSTQAQLA SSESHFASKI QPLLAAQKYD AVLKAFNQRD IKNDSAALRQ LRGQILLSMQ
RTKEAEQALL AAIELMPNLA LAHRSLSMVY MVEKNYAAAS KHLRKTIELG VADAQVYGQL
AYVNLQQGQA ASAVAGYQYA LLLDSDNQQW QQGLLYALIN SQAFDQAQAL LEGMLQANPK
DTNLWLQRGQ IALKQQRPQQ ALSSLETALV LGENNADNIA TLAQLHIQSG SANRAVTLLA
NNITKMVANN NKIEVIDQVC AWLAYQQQWQ QLANLTQALQ KNTNNIPAHY RSRFAVYAAQ
VAQSNGKTKH ATKLLEEAVN NDPSNGEALL TLANILRSQQ RTQRANLYYI RAEALADYKE
RALLGRAQLE IDANNYPEAL RLLRLVAQLN PARTDVLANI QSLENLVRNR S
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