| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2801 |
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| Symbol | |
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| ID | 3968280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3534296 |
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| End bp | 3536311 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921898 |
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| Product | dystroglycan-type cadherin-like |
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| Protein accession | YP_528270 |
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| Protein GI | 90022443 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000577586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000325565 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAAGATGA AGACACAGGC ATTGGCGCTC TCAGCGCTAT GTATGGCTAT GGTCGGCTGC
GGTGGCAGCA GCAGTAGTGA CAATGGCGGT GAAGCCGATA TTCGCTTTCC TTTTGATGGC
GAGATAACTT TATCTGGCGA CACCGATCCA GGTGCCACCC TAACCGCAGT CGTAACAGAT
GCTAATGGCA TCTCAGGCTC TATTTCCTAC GTTTGGACTT CCGGCGATAC TGTTATTACC
AGTGCGACAG GCTCTACTTA TGTAATTGCC GATTCCGACC AAGGTAATAG CATAAGCGTA
ACGGCTACTT ATACCGATGA CGATAACTTT GATGAGTCTG TTTTTGCTTC CGTTACAATT
GAAGCAGCAG CTACTCCGGC GACATTTGCA GGTTTAACTG CCACTGTTAG CAATGAAGCA
ACAGAAGCGC TTACTGGTAC TGTTACTGTT ACCGACCCCA ATACTGGTGA AGCGACAATT
GTAGCGCTAA CCGACGCTAT GACTACATAC GGCACTTTTT CTATTACTGC GGAAGGCAGT
TGGTCATACA CTCTAGACAC TTCAGCAGAC GCCGTTGCGA ACCTAACCTC TACTGACGAT
CCGTTATTAG ACTCTATCGA GCTTGAGTCG GCTGACGGTA CAACTGCAAA CTTGGTTATC
ACAATCACTG GTGCAGAGGT TTCCGGCCCA GTTACAAGCC AAGTGGCTCG TATCACTGAT
AACTCAACCG ACGATACTGG TGAGCTACGA TATGCACTAC CTTCTGCGCA GCTAGCGGGT
AAAATCACTG TATCTTTCTT GAAAGATCTA GATACTTTAG GCTCTGATGA CACCATTAAG
GATGCTTACA TCACCTTGTA TAATACTGAT ACAAGCACAA GTGGTGGCAA AGCGATTCTT
GATTTACGTA TTCAAGATGA CAATTTTGCA ATTCGTGATC AAGATGGCAT TGATGTGATG
AATGCTTTCA CTCCAGGTCA ATGGCAGGAT GTAGAGATTA CTTGGGAAGC CGCTGATGAT
GCCTCTGCTC CTGTGCTGAA CATCCTTATC GATGGCGTAG CCGTTACTTC CGTACCTTAC
ACTGGTTCTT CAACTGCAAT AGGTGGTGTT ACACACGTTG CCTTTAGATT CGCAGATAAC
TCAAGAACAG TAACGGGTAC TTACAATATA GATAACCTAT TCATCTATTC AGATACAGCT
GGCACTGCTT TGGTGTTCTC TGATGACTTT GAAGGTTATA GTGTTGATGA TTCGCTTGAT
ACTGACAACG CGAACTCGCC TTATAACTCA AGTACTTTCG AAGCTGTTGT AGCGGTTATG
GAAGTTCCTG GGGATGACTC CGGTTCGGGT GGCTCTGGCG ATACATCTGG CCCTGGCACC
GCTGGCAATA AGTATGCAGA AATTATTGAT ACAAGCACCG ATGACACTGG TGAATTGAGA
TATGCTCTGC CTGCAGCGCA GTTGGCGGGT AAATTAAATG TATCTTTCCT CAAAGACCTT
GATACTTTAG GGTCTGACGA TACGATTAAA GATGCTTATA TCACTCTGTA CAACACTGAT
ACTAGTACTA GTGGTGGTAA AGCAATTCTT GATTTACGTA TTCAAGATGA CAACTTTGCA
ATACGTGACC AAGACGGCAT CGATGTGATG AATGCCTTTA CACCAGGTCA GTGGCAGGAT
GTTGAAGTAA CATGGGAAGC TGCTGATGCT TCGTCTGCTC CTGTGTTGAA TATTCTTATC
GATGGTGTTG CGGTTACTTC GGTTCCTTAT ACCGGTTCAG CTACGGCTGT TGGTGGTGTT
ACCCATATCG CATTCCGATT TGCGGATAAC TCCAGAACAG TAACTGGTAC TTTTAATGTT
GATGATATTA AAATCTACTC TGATACTGCT GGTACCGCGT TAGTATTTGA AGATAGCTTT
GAGAGTGGTT ACAACACTGG TGATTCGCTA GATACTGATA ATGGTTCTTC ACCTTATCAC
TCAGCTACTT CTGAAGCTGT TGTTGCCGAG GAATAA
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| Protein sequence | MKMKTQALAL SALCMAMVGC GGSSSSDNGG EADIRFPFDG EITLSGDTDP GATLTAVVTD
ANGISGSISY VWTSGDTVIT SATGSTYVIA DSDQGNSISV TATYTDDDNF DESVFASVTI
EAAATPATFA GLTATVSNEA TEALTGTVTV TDPNTGEATI VALTDAMTTY GTFSITAEGS
WSYTLDTSAD AVANLTSTDD PLLDSIELES ADGTTANLVI TITGAEVSGP VTSQVARITD
NSTDDTGELR YALPSAQLAG KITVSFLKDL DTLGSDDTIK DAYITLYNTD TSTSGGKAIL
DLRIQDDNFA IRDQDGIDVM NAFTPGQWQD VEITWEAADD ASAPVLNILI DGVAVTSVPY
TGSSTAIGGV THVAFRFADN SRTVTGTYNI DNLFIYSDTA GTALVFSDDF EGYSVDDSLD
TDNANSPYNS STFEAVVAVM EVPGDDSGSG GSGDTSGPGT AGNKYAEIID TSTDDTGELR
YALPAAQLAG KLNVSFLKDL DTLGSDDTIK DAYITLYNTD TSTSGGKAIL DLRIQDDNFA
IRDQDGIDVM NAFTPGQWQD VEVTWEAADA SSAPVLNILI DGVAVTSVPY TGSATAVGGV
THIAFRFADN SRTVTGTFNV DDIKIYSDTA GTALVFEDSF ESGYNTGDSL DTDNGSSPYH
SATSEAVVAE E
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