| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2658 |
|---|
| Symbol | |
|---|
| ID | 3968516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3373278 |
|---|
| End bp | 3374144 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637921756 |
|---|
| Product | Type IV pilus assembly protein PilM |
|---|
| Protein accession | YP_528130 |
|---|
| Protein GI | 90022303 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0554552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.893411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA TTGCTACTTT CGTACTTTTA ATTACTTTAC TTGGCAGCTT ACCGGTATTC
AGCCAAAGCA TTACTGGCCA ACTAAATATA CCCAATTTAG ACACAGAAAA AGACATGCTC
ATTCACCAAT TACTTGATTT AGCATTAAGT AAAACGGGAA GTAATGTGGA GTATATTGCG
CAACCCAATC AGCTAAGCGC GGGCCGACTT GTAGAACGCG TTGAATCGAA TAAAGTTGAT
GTTTTTTGGG CTGGCATGTC GCCCGAAGTT GAAGAAGCGC TGGCACCAAT TCGCATACCT
ATTTTTAAAG GGTTGCTTGG TCACAGAATT TTTGTAATAC GACGAGGAGA TGAGCACCGT
TTTAAATCGG TTAAAACATT AAGTGACTTG CAACATTTTT CTGCCGGTCA AGGCCGCTTC
TGGGGAGATA CAGACATACT GCAGAAAGCT GGTTTACCCG TAACAACCAC AGTAAAAGGT
GCCAATTTAT GGCCCATGCT CGACGGCGGC CGATTCGACT ACTTTCCGCT TGCAGTGCAT
GAACCTTGGA GCGAAATCGA CGCTCGCCCA GATTTAGATT TAACAGTCGA TTCGAACGTA
CTGTTAGCTT ATCCATTTGC CATGTATTTT TACGTTAATA AAAATAATAC CGAGCTATAC
AAAGCCATTG AAACCGGTAT GAACATAGCC ATAGAAGATG GCAGTTATGA CAAAATGCTT
TTCAATTCAT CGATGCTAAA AGACGCACTG GTTCGAGCAA AAGTGGCCGA CCGAGCAGTT
ATTCGCATAG CCAACCCCAC TATGCACCCC GACACCCCTG TAGACGTTGC TAAATATTGG
TTCGACCCCA CTGCCAAGTT ATTTTGA
|
|---|
| Protein sequence | MKLIATFVLL ITLLGSLPVF SQSITGQLNI PNLDTEKDML IHQLLDLALS KTGSNVEYIA
QPNQLSAGRL VERVESNKVD VFWAGMSPEV EEALAPIRIP IFKGLLGHRI FVIRRGDEHR
FKSVKTLSDL QHFSAGQGRF WGDTDILQKA GLPVTTTVKG ANLWPMLDGG RFDYFPLAVH
EPWSEIDARP DLDLTVDSNV LLAYPFAMYF YVNKNNTELY KAIETGMNIA IEDGSYDKML
FNSSMLKDAL VRAKVADRAV IRIANPTMHP DTPVDVAKYW FDPTAKLF
|
|---|
| |