Gene Sde_2604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2604 
Symbol 
ID3968597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand+ 
Start bp3303473 
End bp3304156 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content49% 
IMG OID637921702 
Productendonuclease III 
Protein accessionYP_528076 
Protein GI90022249 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.324373 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAACA CAAGTAAAGC CCCAGTAAAC ATGCTAAAAG CCGAGCGAGT TGAGTACATA 
TTAAACGAAC TCGAACGGCT TTACCCCGAA ACACCGGTAC CGTTAGACCA CAAAGACCCA 
TACACCTTAC TGGTTGCGGT TTTACTTTCG GCGCAGTGTA CCGATGAGCG TGTAAACCAA 
ATCACCCCCG CGCTATGGCA GCTGGCAGAT AACCCATTCG ATATGGCGAA GCAGTCGGTA 
GAAGATATAA AAGCCATTAT TCGCCCCTGT GGCCTGTCGC CGCAAAAATC GAAAGCCATT 
CAGGGGTTAT CGCAAATACT GGTGGATAAA TACAACGGTG AAGTACCGCA AGACATGGCT 
CTGCTGGAAG AGCTACCTGG TGTAGGTCAT AAAACAGCCA GCGTGGTGGT GGCACAATCG 
TTTGGTATAC CCGCTTTTCC GGTGGATACG CATATACACA GGCTGGCGCA GCGCTGGGGT 
TTAACATCTG GCAAAAACGT TACCCAAACA GAAAAAGACT TAAAACGCCT GTTTCCTAAA 
GAAAAATGGA ACAAACTACA CTTGCAGATT ATATTTTATG GGCGCGAATA CTGCACAGCG 
AGAGGCTGCC AAGGCACAAC CTGCCCCATT TGCACCACTT GCTACCCCGC GCGTAAACAC 
CCCAAGAAGA TTGCAAAGGC CTAA
 
Protein sequence
MTNTSKAPVN MLKAERVEYI LNELERLYPE TPVPLDHKDP YTLLVAVLLS AQCTDERVNQ 
ITPALWQLAD NPFDMAKQSV EDIKAIIRPC GLSPQKSKAI QGLSQILVDK YNGEVPQDMA 
LLEELPGVGH KTASVVVAQS FGIPAFPVDT HIHRLAQRWG LTSGKNVTQT EKDLKRLFPK 
EKWNKLHLQI IFYGREYCTA RGCQGTTCPI CTTCYPARKH PKKIAKA