| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2560 |
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| Symbol | |
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| ID | 3968726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3250357 |
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| End bp | 3251478 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921658 |
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| Product | di-trans-poly-cis-decaprenylcistransferase |
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| Protein accession | YP_528032 |
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| Protein GI | 90022205 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.24572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.269335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAATA TTGCGGGTCG TGTGTTGGGT TGTTCAGATG GTAAATCGAG CGCTCAACTA
GGGTTATCGC TTATAGAGCT TTTGATTTCG ATGTTAATTG CCGCATTTAT TTTTGGCGGC
GTGCTATCGG TGATGCTGTC CGGTAGGAAT GCCCATATAT CTGAACAAGA AACAGGAATA
CTTCAAGAAA ACCAGCGTTT TGCCACAGCA CTGCTTACAC GTGATATTCG TTTGGCTGGT
AGCTTTGGTT GCGGGTCTAC TGAGCGAGCA TCAGTTGTTA ATTCAGTTGA CCCTCTCGTT
GTTGCCGATG GCGGTTTACT TGATGGAGGC GCATTGATGG GGTACGAGGG GAGTACGGAT
AAATCCACCT TTCCATCTGG CTTTCAGGCT AATGCAACGG TTGGCTCCGA TGCAATTATA
TTGCGTTATG CAGACCCAGA TACATCTGTT TCTATAAGCG GTCATAGCCC TAATGCTGCT
GTAATGCAGC TGCACCAGCC GCATAGGTTC AATGAAGACG ATATTTTAAT GGTGGTGGAT
TCAACTTGTC GCCATGTAGG GGTTTTCCAG CTAACAGCGG GTAATAACAA CCAAATTAAA
CACAACGCCG GCAGTAACCG GGGCGATGCA GGAAATTGTA CGAAGGTGTT GTTTGCGCCA
ACGAGTATTG ACTGCACCTC GCCAAGTTGC GGCCCGACGT CTTGCGGCGG CTATTCTGCC
GCCGCTTATG GGGATGGTTC AGAGGTGATG CAATTTGTTG CAAACGCATA CTATATTGGC
CCTTCAACAG TTTTGCCTGG TGTGACAGCG TTAAAGCGGC AGGTTTTATC TGAAATGTCT
ACGCGCGCAG AAGAAATTGC TCAGGGTGTT GAGAGTATGG AATTACTCTA CGGTGTCGAT
GTTGATACAC CGTTGGATGG CGACATTGAT AGGTTTGTAA GCGCCGATAA CGTTAGCGAT
TGGACCGCAG TTTTAGCCGT GCGATTTAAT TTGATTTTCC GCTCGCAAAT TGAAATGTTT
GATCAAGACC AGAGCGTTAC GATAAATGGC GTTACTTACA CAGATAAATA TATGCGTAAG
CTGTCTAGCA GTACTGTGCA AGTTCGGAAC AGAGGGTTGT AG
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| Protein sequence | MSNIAGRVLG CSDGKSSAQL GLSLIELLIS MLIAAFIFGG VLSVMLSGRN AHISEQETGI
LQENQRFATA LLTRDIRLAG SFGCGSTERA SVVNSVDPLV VADGGLLDGG ALMGYEGSTD
KSTFPSGFQA NATVGSDAII LRYADPDTSV SISGHSPNAA VMQLHQPHRF NEDDILMVVD
STCRHVGVFQ LTAGNNNQIK HNAGSNRGDA GNCTKVLFAP TSIDCTSPSC GPTSCGGYSA
AAYGDGSEVM QFVANAYYIG PSTVLPGVTA LKRQVLSEMS TRAEEIAQGV ESMELLYGVD
VDTPLDGDID RFVSADNVSD WTAVLAVRFN LIFRSQIEMF DQDQSVTING VTYTDKYMRK
LSSSTVQVRN RGL
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