| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2556 |
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| Symbol | |
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| ID | 3968722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3243489 |
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| End bp | 3244043 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637921654 |
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| Product | Tfp pilus assembly protein FimT-like |
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| Protein accession | YP_528028 |
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| Protein GI | 90022201 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0588061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGATACA CCAGACGTTT AGGCTTTACC CTATTAGACC TATTAATAGC ACTCGCCATA
CTAAGCTTAC TTACCAACCT CGCAATACCG AACTTAATAT CCTCTTTAGA AAAATCGAAA
TCAAAGTCGT TGACGGCAAG TGTTCGCTCA GCAATCGCCT TAGCAAGAAC AAAAGCTATT
ACTACAGAGC AAACAGTAAG CGTATGCGGC TTACACAATA ATAATGAATG TACAAACACC
CAATTTACTC AAATTGCTGT ATTTGTAGAT AACAATAAGA ATGGACAAAT AGATGACGGT
GAAAATGTAC TGCTACTAAA TGATCTTCAA TACTCTGGGC AATTAAGACT AGGGGCTTCG
TTTGGTAGAG ACTATATACG CTTTAAAAAA GACGGTAGCG CACAACAGGC TGGGAGCTTT
ACTTATTGCA ACCCACAGCA TCCAACACAT TCAACCCGAG TAACCATTAG CATGCCAGGT
AGGCTGTACG TAGCTCGAGA TTTAGATGGC GACGGGATAG TTGAAAATTC AGACGGCAGC
CCAGTAAGGT GCTAG
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| Protein sequence | MGYTRRLGFT LLDLLIALAI LSLLTNLAIP NLISSLEKSK SKSLTASVRS AIALARTKAI
TTEQTVSVCG LHNNNECTNT QFTQIAVFVD NNKNGQIDDG ENVLLLNDLQ YSGQLRLGAS
FGRDYIRFKK DGSAQQAGSF TYCNPQHPTH STRVTISMPG RLYVARDLDG DGIVENSDGS
PVRC
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