| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2529 |
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| Symbol | tolB |
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| ID | 3968756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3201338 |
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| End bp | 3202675 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921622 |
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| Product | translocation protein TolB |
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| Protein accession | YP_528001 |
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| Protein GI | 90022174 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000000320948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTTGG GGAGAAAGCA TTTGGCTAAG GCAGGCAGTA AATGGTTGGC AGGTTCAAGC
CAATGGGCGC TGAGCTTAAT GCTTATATTG GCTGCAGGCA TGGCCCGTGC AGAGCTGGTG
ATTGAGATTA CTCAAGGGGC GGACAACCCC ACCCCAATTG CCGTAGTGCC TTTTGGTGGC
AATGGTGGCT TGAGTGAAAA TGTATCTCGT ATCATATCTG CCGATTTAGA TCGCAGTGGT
TTATTTGAAT CTAAAAGCCC TGAAAATATG TTGTCGTTTC CATCGAAACA AGCAGATATT
TTTTATCGCG ATTGGCGTAT ATTAGGCACC GATTATTTAG TGATAGGTGA TATTCAGCGA
AGCGAAAGCG GCTACGTAGC TGAGTACGGT TTGTACGACG TGCTTCAGCA GAAAAAAATG
TTAGGTAAAG TGCTATCTGT AGGCCCAACG GGTTTGCGTG ATATGGCGCA CAAAATTAGT
GATGATGTGT ATCAAGCGTT AACAGGCATT CGAGGCGCTT TCTCTACCAA GATTCTCTAT
ATCGAAGATA TGGGGCCTAG CGTTAAAGAA AGATATCGCT TAATTAAGGC TGATGCTGAT
GGCGCAAGGG AGCAGTTGAT TTTTAAGTCG AGTGAGCCTT TGCTATCACC CGCTTGGTCT
AATGATTTGA CACAGGTAGC GTATGTATCT TTTGAAACAT CGCGACCAGC AATATTTAGA
CATAACTTAA TTACCGGTAA GCGAGAGCAA CTTACAAACT TCAAGGGGTT GAATGGCGCG
CCAGCATGGT CGCCTGATGA TTCTAAATTA GCTCTCGTGT TATCGAAGGA TGGCAACCCA
GAAATTTACA TTTTGGACAT TGCTACAAGA GCGCTCCAGC GAGTCACAAA AACCCACTCG
GCGGTGATAG ATACCGAACC AAACTGGACC GCGGACGGAA AAGGGATAAT TTTTACGTCA
AATCGCGGTG GAAACCCACA AATTTATCAA GTGGGTCTTG CAACGGGACG GGTGGAACGC
TTAACCTTCG AGGGTGATTA TAATGCCAGA CCACGGGTCA CGCCGGATGG TAAAAGTTTG
GTTATGGTTC ACAGGGAAGA TGGAGTATTC CATATTGCTT GGCAGGACAT TCAGTCAGGT
GACATGCGTA TCCTGACTGA AACGTGGTTA GATGAATCGC CCAGTATTGC TCCGAACGGC
GCTATGCTAT TGTACGCAAC ACAGCATAAC AACAAAGGTG TATTGGCCGC GGTTTCAATT
GACGCAGGGG TAAAATTTCG TCTGCCTTCT AAACAGGGTA GCGTAAGAGA GCCAGCTTGG
TCGCCTTACG CGAAATAG
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| Protein sequence | MILGRKHLAK AGSKWLAGSS QWALSLMLIL AAGMARAELV IEITQGADNP TPIAVVPFGG
NGGLSENVSR IISADLDRSG LFESKSPENM LSFPSKQADI FYRDWRILGT DYLVIGDIQR
SESGYVAEYG LYDVLQQKKM LGKVLSVGPT GLRDMAHKIS DDVYQALTGI RGAFSTKILY
IEDMGPSVKE RYRLIKADAD GAREQLIFKS SEPLLSPAWS NDLTQVAYVS FETSRPAIFR
HNLITGKREQ LTNFKGLNGA PAWSPDDSKL ALVLSKDGNP EIYILDIATR ALQRVTKTHS
AVIDTEPNWT ADGKGIIFTS NRGGNPQIYQ VGLATGRVER LTFEGDYNAR PRVTPDGKSL
VMVHREDGVF HIAWQDIQSG DMRILTETWL DESPSIAPNG AMLLYATQHN NKGVLAAVSI
DAGVKFRLPS KQGSVREPAW SPYAK
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