| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2505 |
|---|
| Symbol | |
|---|
| ID | 3968787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3175100 |
|---|
| End bp | 3176584 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637921596 |
|---|
| Product | CDP-diacylglycerol--serine O-phosphatidyltransferase |
|---|
| Protein accession | YP_527977 |
|---|
| Protein GI | 90022150 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00721444 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTT TAGGGCTCGA TATAGGTAGT TCTTCGGTAA AAGTTGCACT GCTCGATGGT
GAAACTGGCC GCTGTTTAGG CGCAGTTCAA CAGCCAGAGC AGGAATTTAA AATCGATGCG
CCTCAGACAG GTTGGGCAGA ACAAGCGCCT ACCATGTGGT GGGATGCTAC CGTCGCCGGT
ATCAAACAGC TTATTGCGCA AAACCCAGGT GCCGGTGAGC GTATAAGTGC CATAGGTATT
TCATACCAAA TGCACGGCTT GGTGGTTGTA GATAAGCAAG GCGAGGTTTT ACACCCTTCT
ATTATTTGGT GCGATAGTCG CGCCGCGCAA ACTGGTGCTG CTGCATATGC CGAATTGGGT
GAACAGTGGT GCATGAGCAA CCTGCTTAAC TCGCCCGGTA ATTTCACCTT TGCCAAATTA
AAGTGGCTGG CTGAAAACCG CCCAGAGGTT TTCGCGAAAA TTGATAAAAT TATGTTGCCT
GGCGATTACA TCGCAATGCG TTTAACAGGC GAAGCCACAA CAACACCTAG TGGTTTATCT
GAAGGTGTAA TGTGGAACTT CCAAAATCAA TCTGCGGCGG TAGATGTATT TGACCGTTTA
GGTGTAAACC CTAACCTTAT TCCTGCTATT AAACCTAATT TCGGCGAGGC AGGGCAGGTA
TCGAGTGAGG TGGCTAACGC CTTGGGTATT AACCCCGCAG CAAAACTTAC CTATCGCGCC
GGCGACCAGC CCAACAATGC TTTCAGTTTA AATGTGCTTG AGAGCGGCGA ATTTGCCACC
ACTGCGGGTA CCTCGGGTGT GGTTTATGCG GTTACAGATA AAAACATTTC TGATAGGCAG
CAACGTATTA ATAGTTTTTT ACACGTAAAC CATCAGCCGC AATCACCTAC AGTTGGCTTA
CTGGCATGTA TAAATGGTGC GGGGCGCATG AATAGCTGGT TGCGCAATTT GTTTGTAGAA
GCCGGCAGCG ATATTAGTTA CGCAAGTATG AGTGATGTGG CAAACAAAGC TCCCATCGGT
AGCGAAGGCT TAGTAGTGCA TCCGTTTGGT AATGGTGGCG AGCGAATGTT TGGTAATAAA
TTGCTGCAGG CGGAAATATC AGGCTTAGAC TTAAATCGTC ACGGTTTGTC GCACATTTCA
CGCGGCGTGC AAGAAGGTGT GGCCTTTGCC ATGGCAATGG GCACAGAAAT GATTAACAAC
ATGGGGGTGG CCGCGCATGT TATTCGCGCA GGCAAGGCTA ACATGTTTTT AAGCCCCGTA
TTTAGTGCTG CATTTGTGAA TGCAACGGGT ACACCCGTAG AGCTATACGA CACCAATGGC
GCAGAGGGTG CGGCCCGCGG TGCAGGTTGG GCGAGTGGGT ATTACACCTC GCGCGAAGAA
GCATTTAGCT GTTTAGAAAA ATTAAGCGTA ATAGAGCCAG ATCAAACTAC TGCGCAGCAA
TATCAAGATG CATACACGTC TTGGAAGAAC AAATTAGCCC TTTAG
|
|---|
| Protein sequence | MIFLGLDIGS SSVKVALLDG ETGRCLGAVQ QPEQEFKIDA PQTGWAEQAP TMWWDATVAG
IKQLIAQNPG AGERISAIGI SYQMHGLVVV DKQGEVLHPS IIWCDSRAAQ TGAAAYAELG
EQWCMSNLLN SPGNFTFAKL KWLAENRPEV FAKIDKIMLP GDYIAMRLTG EATTTPSGLS
EGVMWNFQNQ SAAVDVFDRL GVNPNLIPAI KPNFGEAGQV SSEVANALGI NPAAKLTYRA
GDQPNNAFSL NVLESGEFAT TAGTSGVVYA VTDKNISDRQ QRINSFLHVN HQPQSPTVGL
LACINGAGRM NSWLRNLFVE AGSDISYASM SDVANKAPIG SEGLVVHPFG NGGERMFGNK
LLQAEISGLD LNRHGLSHIS RGVQEGVAFA MAMGTEMINN MGVAAHVIRA GKANMFLSPV
FSAAFVNATG TPVELYDTNG AEGAARGAGW ASGYYTSREE AFSCLEKLSV IEPDQTTAQQ
YQDAYTSWKN KLAL
|
|---|
| |