| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2484 |
|---|
| Symbol | |
|---|
| ID | 3968561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3137030 |
|---|
| End bp | 3137443 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921575 |
|---|
| Product | putative TonB system transport protein ExbD2 |
|---|
| Protein accession | YP_527956 |
|---|
| Protein GI | 90022129 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000000000778685 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTA AAGCCAGAGC TATAACTGCA GATGATAAAG CCGATGTGGA TTTAACCCCC
ATGTTGGATG TTGTTTTTAT TATGCTTATC TTCTTTATTG TTACCGCTTC GTTTGTAACC
GAGAGGGTAA TAGGGCTAAA CCTGCCAGAG AACGCCCCTG TACAGCCAAT AAGCCCAACC
CCTAGCTTGT TGGTAGAGGT TTCTGCTAAC AACGATATTT ATATAAACAA TCGCAGGGTA
GATGCTTCTG CTGTGCGCGC ATTAATTGCC CAAAAGCATG CCGAGTTGCC CGAAGCGGGG
TTGGTAATTC GCGCCCATGA GCTTTCATCT GCAGAAACCT ATGTGCTAGT GGCTGATGCA
GCACAACAAG CGCGAGTGAA TAATATTTCT TTAGTGCCGT TTGCCGATAA GTAA
|
|---|
| Protein sequence | MNRKARAITA DDKADVDLTP MLDVVFIMLI FFIVTASFVT ERVIGLNLPE NAPVQPISPT
PSLLVEVSAN NDIYINNRRV DASAVRALIA QKHAELPEAG LVIRAHELSS AETYVLVADA
AQQARVNNIS LVPFADK
|
|---|
| |