| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2283 |
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| Symbol | |
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| ID | 3967959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2903787 |
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| End bp | 2904872 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637921374 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_527755 |
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| Protein GI | 90021928 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00902179 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAG CATTTCTTAT TTCGCTAGGC CTACTATTCT TAGTTGCATT TGTAGGTACA
GGTGTATTTC TATATAAAAA ATCGCAGCAA AAGCCAGTAA TTTTTAAAAC CGCGCAAGCT
GAAACGCGAG ATATTATTAG AAAAACAATC GCCACCGGTA AAATTGTGCC GCGCAAAGAA
GTGGAGATTA AATCTCAGGT TTCAGGGGTG GTAGATCAAG TATATGTAGA AGCTGGCGAG
TATATTGAAA AAAATGCGCT TATCGCCAAA ATACAAATAA TACCGAATGT TGAACGGCTA
AACGCAGCAG AATCACGCTT GCAATCTGCC ACCATTAGCT TTGAAGACGC AGCCCGCGAA
CTGCAACGTC AAAAACAACT GTTCGAAGAC CAGCTTATAT CCGAAGCGGA ATACCGAAAA
TACCTACTTG AATTTAATTT AAAGCAAGAA GCGGTGTCGT CTGCAGAAAG TAACCTCGCC
ATTATTCGTG AAGGCGCATC TAAAAAAGCT GGGCAAGTCT CTAACCTTGT GCACGCTACG
CTATCGGGCA CCATACTCGA TATACCCGTA AAAGAAGGTC ATTTTATAAC GGAAACTAAC
ACTTTTAACG CCGGCACCAC TATTGCCACC ATTGCCAATA TGCAGGATCT AATTTTCGAA
GGTACTGTGG ACGAATCGGA AGTGGGTAAA ATCGCTGAAG GTATGGAGCT GGTATTGAAC
ATTGGCGCCT TAGAAACAGA ACAATTTACC GCCGAACTTG AGTATATATC CCCTAAAGGC
GTGGATGACC AAGGCACCAT TAAATTTGAA ATACGCGCTG CAGTAAAATT AAAAGACGAT
AGATTTTTAC GTGCAGGCTA CAGCGCAAAT GCCGATATAG TGCTAGACCG TCGCGAGCAG
GTACTGGCCC TAAACGAACG CTTCTTACAA TTCGACGATA AAACACCCTA TGTCGAAGTA
GAAACCGCCC CACAAACCTT CGAGAGGCGC GACATAGAAA CAGGCTTATC GGACGGTATA
TTTATAGAAA TACTATCGGG GCTAAGCCTA ACAGACAAAA TAAAAGAACC CATTATCGGG
CAATAA
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| Protein sequence | MKKAFLISLG LLFLVAFVGT GVFLYKKSQQ KPVIFKTAQA ETRDIIRKTI ATGKIVPRKE
VEIKSQVSGV VDQVYVEAGE YIEKNALIAK IQIIPNVERL NAAESRLQSA TISFEDAARE
LQRQKQLFED QLISEAEYRK YLLEFNLKQE AVSSAESNLA IIREGASKKA GQVSNLVHAT
LSGTILDIPV KEGHFITETN TFNAGTTIAT IANMQDLIFE GTVDESEVGK IAEGMELVLN
IGALETEQFT AELEYISPKG VDDQGTIKFE IRAAVKLKDD RFLRAGYSAN ADIVLDRREQ
VLALNERFLQ FDDKTPYVEV ETAPQTFERR DIETGLSDGI FIEILSGLSL TDKIKEPIIG
Q
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